Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 TOP3BP1-201ENST00000420768 1380 ntBASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 NCF1C-201ENST00000438382 1427 ntBASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMA1Q9UHB6 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 KRT16P4-201ENST00000453883 522 ntBASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AC132008.2-207ENST00000454517 770 ntBASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AC106795.1-205ENST00000512851 1056 ntBASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AL590326.2-201ENST00000625139 305 ntBASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMA1Q9UHB6 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 PAWRP1-201ENST00000451083 565 ntBASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 MIR4492-201ENST00000581627 80 ntBASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 AC069148.1-201ENST00000608741 768 ntBASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 AC092119.3-201ENST00000612618 583 ntBASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 AL022326.1-202ENST00000641533 845 ntBASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMA1Q9UHB6 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 AL512652.2-201ENST00000625156 1716 ntBASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 NKAPP1-205ENST00000585790 367 ntBASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LIMA1Q9UHB6 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms