Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.71■□□□□ 0.11
UBQLN3Q9H347 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
UBQLN3Q9H347 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
UBQLN3Q9H347 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
UBQLN3Q9H347 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
UBQLN3Q9H347 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
UBQLN3Q9H347 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 AL805961.1-202ENST00000641562 540 ntBASIC15.7■□□□□ 0.1
UBQLN3Q9H347 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 AC018695.7-201ENST00000624587 2492 ntBASIC15.7■□□□□ 0.1
UBQLN3Q9H347 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.7■□□□□ 0.1
UBQLN3Q9H347 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 RPS15P9-201ENST00000494093 319 ntBASIC15.69■□□□□ 0.1
UBQLN3Q9H347 IGHV3-65-201ENST00000523210 341 ntBASIC15.69■□□□□ 0.1
UBQLN3Q9H347 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 AC008667.4-201ENST00000607370 168 ntBASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
UBQLN3Q9H347 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
UBQLN3Q9H347 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.68■□□□□ 0.1
UBQLN3Q9H347 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
UBQLN3Q9H347 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.68■□□□□ 0.1
UBQLN3Q9H347 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
UBQLN3Q9H347 RNF216P1-203ENST00000404404 2427 ntBASIC15.68■□□□□ 0.1
UBQLN3Q9H347 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
UBQLN3Q9H347 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms