Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 KLF4P1-201ENST00000412782 1185 ntBASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 AC112907.2-201ENST00000448639 330 ntBASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28BQ9BUN5 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AL845331.1-201ENST00000424978 1190 ntBASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AC117947.1-201ENST00000427448 529 ntBASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AD001527.2-201ENST00000622994 785 ntBASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AC006058.4-201ENST00000624016 1670 ntBASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms