Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 BX005266.1-201ENST00000473402 457 ntBASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 AC138894.3-201ENST00000603787 634 ntBASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 AP001269.4-201ENST00000609611 512 ntBASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
ATG4AQ8WYN0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 AC243591.1-201ENST00000452967 1364 ntBASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATG4AQ8WYN0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms