Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 TUBB3P1-201ENST00000405796 1332 ntBASIC16.42■□□□□ 0.22
LMX1AQ8TE12 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AC016027.1-202ENST00000607927 1699 ntBASIC16.41■□□□□ 0.22
LMX1AQ8TE12 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AL512356.2-201ENST00000546955 174 ntBASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LMX1AQ8TE12 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 SLC25A39P2-201ENST00000537614 270 ntBASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 AC026150.2-201ENST00000564693 1156 ntBASIC16.4■□□□□ 0.22
LMX1AQ8TE12 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 AC027307.2-201ENST00000591252 911 ntBASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CYP2A7P1-201ENST00000595391 815 ntBASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1AQ8TE12 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.39■□□□□ 0.22
LMX1AQ8TE12 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms