Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AL391256.1-201ENST00000443260 1855 ntBASIC10.53□□□□□ -0.72
LINC00643Q86TS7 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AP006587.1-201ENST00000534129 1502 ntBASIC10.53□□□□□ -0.72
LINC00643Q86TS7 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.72
LINC00643Q86TS7 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 CICP17-201ENST00000418553 2377 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MIR6724-1-201ENST00000616420 92 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MIR6724-2-201ENST00000616483 92 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MIR6724-4-201ENST00000617390 92 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MIR6724-3-201ENST00000622482 92 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 AL139385.1-201ENST00000611744 3272 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 DGCR9-201ENST00000609630 2415 ntBASIC10.52□□□□□ -0.73
LINC00643Q86TS7 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
LINC00643Q86TS7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms