Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 ZNF890P-202ENST00000530367 1156 ntBASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 AC124947.2-201ENST00000547118 1133 ntBASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 SPDYE19P-201ENST00000338590 713 ntBASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 AL512361.1-201ENST00000554200 418 ntBASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 MIR4492-201ENST00000581627 80 ntBASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 AL133215.2-201ENST00000609242 977 ntBASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC88AQ3V6T2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AC135586.1-201ENST00000539323 574 ntBASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 CROCCP2-202ENST00000412962 2773 ntBASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 DFFBP1-201ENST00000433250 979 ntBASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AC234783.1-201ENST00000441761 496 ntBASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 AC120498.9-201ENST00000339021 3867 ntBASIC20.41■□□□□ 0.86
CCDC88AQ3V6T2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 RPL37AP1-201ENST00000412502 279 ntBASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 AC004945.1-201ENST00000416738 983 ntBASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC88AQ3V6T2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 AC007389.4-201ENST00000454674 793 ntBASIC20.39■□□□□ 0.86
CCDC88AQ3V6T2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms