Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 ME2P1-201ENST00000426028 1970 ntBASIC15.79■□□□□ 0.12
RFX4Q33E94 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
RFX4Q33E94 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX4Q33E94 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX4Q33E94 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RFX4Q33E94 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX4Q33E94 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX4Q33E94 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
RFX4Q33E94 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
RFX4Q33E94 VENTXP5-201ENST00000523979 775 ntBASIC15.79■□□□□ 0.12
RFX4Q33E94 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX4Q33E94 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 RNF126P1-202ENST00000569893 925 ntBASIC15.79■□□□□ 0.12
RFX4Q33E94 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX4Q33E94 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
RFX4Q33E94 PAUPAR-201ENST00000630360 2965 ntBASIC15.79■□□□□ 0.12
RFX4Q33E94 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX4Q33E94 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX4Q33E94 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 HLA-J-202ENST00000469281 1241 ntBASIC15.78■□□□□ 0.12
RFX4Q33E94 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.78■□□□□ 0.12
RFX4Q33E94 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.78■□□□□ 0.12
RFX4Q33E94 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.78■□□□□ 0.12
RFX4Q33E94 AC109462.3-201ENST00000573934 613 ntBASIC15.78■□□□□ 0.12
RFX4Q33E94 AC019129.2-201ENST00000609837 1235 ntBASIC15.78■□□□□ 0.12
RFX4Q33E94 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RFX4Q33E94 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX4Q33E94 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 HYMAI-201ENST00000635591 3347 ntBASIC15.78■□□□□ 0.12
RFX4Q33E94 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX4Q33E94 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
RFX4Q33E94 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 AL645728.1-201ENST00000366221 2101 ntBASIC15.77■□□□□ 0.12
RFX4Q33E94 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
RFX4Q33E94 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.77■□□□□ 0.12
RFX4Q33E94 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.77■□□□□ 0.12
RFX4Q33E94 AK4P3-201ENST00000418260 669 ntBASIC15.77■□□□□ 0.12
RFX4Q33E94 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX4Q33E94 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX4Q33E94 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms