Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SF3A1Q15459 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SF3A1Q15459 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SF3A1Q15459 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.58■□□□□ 0.72
SF3A1Q15459 LINC00982-205ENST00000420957 435 ntBASIC19.58■□□□□ 0.72
SF3A1Q15459 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.58■□□□□ 0.72
SF3A1Q15459 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SF3A1Q15459 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.58■□□□□ 0.72
SF3A1Q15459 AL732292.2-201ENST00000609649 430 ntBASIC19.58■□□□□ 0.72
SF3A1Q15459 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SF3A1Q15459 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
SF3A1Q15459 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.57■□□□□ 0.72
SF3A1Q15459 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.57■□□□□ 0.72
SF3A1Q15459 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SF3A1Q15459 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.57■□□□□ 0.72
SF3A1Q15459 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.57■□□□□ 0.72
SF3A1Q15459 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.57■□□□□ 0.72
SF3A1Q15459 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SF3A1Q15459 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.57■□□□□ 0.72
SF3A1Q15459 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SF3A1Q15459 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SF3A1Q15459 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.56■□□□□ 0.72
SF3A1Q15459 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SF3A1Q15459 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
SF3A1Q15459 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.56■□□□□ 0.72
SF3A1Q15459 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.56■□□□□ 0.72
SF3A1Q15459 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.56■□□□□ 0.72
SF3A1Q15459 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.56■□□□□ 0.72
SF3A1Q15459 BX005266.1-201ENST00000473402 457 ntBASIC19.56■□□□□ 0.72
SF3A1Q15459 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SF3A1Q15459 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.56■□□□□ 0.72
SF3A1Q15459 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SF3A1Q15459 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
SF3A1Q15459 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
SF3A1Q15459 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SF3A1Q15459 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.56■□□□□ 0.72
SF3A1Q15459 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SF3A1Q15459 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.56■□□□□ 0.72
SF3A1Q15459 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SF3A1Q15459 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.55■□□□□ 0.72
SF3A1Q15459 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.55■□□□□ 0.72
SF3A1Q15459 AC106795.1-205ENST00000512851 1056 ntBASIC19.55■□□□□ 0.72
SF3A1Q15459 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.55■□□□□ 0.72
SF3A1Q15459 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
SF3A1Q15459 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.55■□□□□ 0.72
SF3A1Q15459 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms