Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.52■□□□□ 0.56
CLCN3P51790 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.52■□□□□ 0.56
CLCN3P51790 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CLCN3P51790 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.52■□□□□ 0.56
CLCN3P51790 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CLCN3P51790 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.52■□□□□ 0.56
CLCN3P51790 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CLCN3P51790 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.52■□□□□ 0.56
CLCN3P51790 FAM58DP-201ENST00000428076 619 ntBASIC18.52■□□□□ 0.56
CLCN3P51790 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.52■□□□□ 0.56
CLCN3P51790 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.52■□□□□ 0.56
CLCN3P51790 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.52■□□□□ 0.56
CLCN3P51790 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CLCN3P51790 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CLCN3P51790 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLCN3P51790 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLCN3P51790 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CLCN3P51790 PCDHB18P-201ENST00000524813 2368 ntBASIC18.52■□□□□ 0.55
CLCN3P51790 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CLCN3P51790 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.51■□□□□ 0.55
CLCN3P51790 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.51■□□□□ 0.55
CLCN3P51790 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.51■□□□□ 0.55
CLCN3P51790 AC016027.1-202ENST00000607927 1699 ntBASIC18.51■□□□□ 0.55
CLCN3P51790 WASH6P-202ENST00000359512 1437 ntBASIC18.51■□□□□ 0.55
CLCN3P51790 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.51■□□□□ 0.55
CLCN3P51790 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.51■□□□□ 0.55
CLCN3P51790 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCN3P51790 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCN3P51790 KRT18P32-201ENST00000424695 1287 ntBASIC18.51■□□□□ 0.55
CLCN3P51790 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCN3P51790 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCN3P51790 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCN3P51790 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.51■□□□□ 0.55
CLCN3P51790 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCN3P51790 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCN3P51790 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.51■□□□□ 0.55
CLCN3P51790 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.51■□□□□ 0.55
CLCN3P51790 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCN3P51790 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CLCN3P51790 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CLCN3P51790 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.51■□□□□ 0.55
CLCN3P51790 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.5■□□□□ 0.55
CLCN3P51790 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.5■□□□□ 0.55
CLCN3P51790 PMS2P4-201ENST00000412466 1052 ntBASIC18.5■□□□□ 0.55
CLCN3P51790 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
CLCN3P51790 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CLCN3P51790 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.5■□□□□ 0.55
CLCN3P51790 MIR3909-201ENST00000579518 119 ntBASIC18.5■□□□□ 0.55
CLCN3P51790 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.5■□□□□ 0.55
CLCN3P51790 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.5■□□□□ 0.55
CLCN3P51790 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCN3P51790 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCN3P51790 TUBB8P12-201ENST00000308911 1335 ntBASIC18.49■□□□□ 0.55
CLCN3P51790 TUBB7P-202ENST00000428444 1305 ntBASIC18.49■□□□□ 0.55
CLCN3P51790 TUBB8P7-204ENST00000567960 1332 ntBASIC18.49■□□□□ 0.55
CLCN3P51790 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CLCN3P51790 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.49■□□□□ 0.55
CLCN3P51790 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.49■□□□□ 0.55
CLCN3P51790 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.49■□□□□ 0.55
CLCN3P51790 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CLCN3P51790 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms