Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CENPFP49454 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.83■□□□□ 0.6
CENPFP49454 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.82■□□□□ 0.6
CENPFP49454 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 AL133215.2-201ENST00000609242 977 ntBASIC18.82■□□□□ 0.6
CENPFP49454 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CENPFP49454 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.82■□□□□ 0.6
CENPFP49454 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CENPFP49454 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.82■□□□□ 0.6
CENPFP49454 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.82■□□□□ 0.6
CENPFP49454 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.82■□□□□ 0.6
CENPFP49454 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CENPFP49454 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.81■□□□□ 0.6
CENPFP49454 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.81■□□□□ 0.6
CENPFP49454 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CENPFP49454 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CENPFP49454 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 MYCLP2-201ENST00000449268 967 ntBASIC18.81■□□□□ 0.6
CENPFP49454 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.81■□□□□ 0.6
CENPFP49454 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CENPFP49454 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CENPFP49454 AC087499.6-201ENST00000411576 835 ntBASIC18.81■□□□□ 0.6
CENPFP49454 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.81■□□□□ 0.6
CENPFP49454 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
CENPFP49454 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.81■□□□□ 0.6
CENPFP49454 PP12613-201ENST00000424958 2230 ntBASIC18.81■□□□□ 0.6
CENPFP49454 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.81■□□□□ 0.6
CENPFP49454 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.8■□□□□ 0.6
CENPFP49454 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CENPFP49454 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.8■□□□□ 0.6
CENPFP49454 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CENPFP49454 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.8■□□□□ 0.6
CENPFP49454 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.8■□□□□ 0.6
CENPFP49454 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CENPFP49454 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.8■□□□□ 0.6
CENPFP49454 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CENPFP49454 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CENPFP49454 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 CSF2RBP1-201ENST00000447905 391 ntBASIC18.8■□□□□ 0.6
CENPFP49454 AC093004.1-201ENST00000508850 424 ntBASIC18.8■□□□□ 0.6
CENPFP49454 DOC2GP-202ENST00000514950 1163 ntBASIC18.8■□□□□ 0.6
CENPFP49454 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CENPFP49454 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CENPFP49454 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms