Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL18A1P39060 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC21.95■■□□□ 1.1
COL18A1P39060 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL18A1P39060 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.95■■□□□ 1.1
COL18A1P39060 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.95■■□□□ 1.1
COL18A1P39060 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC21.95■■□□□ 1.1
COL18A1P39060 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC21.95■■□□□ 1.1
COL18A1P39060 RPSAP52-203ENST00000622976 1023 ntBASIC21.95■■□□□ 1.1
COL18A1P39060 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
COL18A1P39060 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL18A1P39060 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC21.95■■□□□ 1.1
COL18A1P39060 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.95■■□□□ 1.1
COL18A1P39060 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
COL18A1P39060 TTTY23B-201ENST00000442790 549 ntBASIC21.94■■□□□ 1.1
COL18A1P39060 ELK1P1-201ENST00000485699 580 ntBASIC21.94■■□□□ 1.1
COL18A1P39060 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC21.94■■□□□ 1.1
COL18A1P39060 AC092337.1-201ENST00000568699 1129 ntBASIC21.94■■□□□ 1.1
COL18A1P39060 MIR6805-201ENST00000615055 62 ntBASIC21.94■■□□□ 1.1
COL18A1P39060 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
COL18A1P39060 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC21.94■■□□□ 1.1
COL18A1P39060 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.94■■□□□ 1.1
COL18A1P39060 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC21.94■■□□□ 1.1
COL18A1P39060 NOC2LP1-202ENST00000452600 2235 ntBASIC21.94■■□□□ 1.1
COL18A1P39060 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
COL18A1P39060 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.94■■□□□ 1.1
COL18A1P39060 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
COL18A1P39060 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC21.94■■□□□ 1.1
COL18A1P39060 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
COL18A1P39060 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC21.94■■□□□ 1.1
COL18A1P39060 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC21.94■■□□□ 1.1
COL18A1P39060 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
COL18A1P39060 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC21.94■■□□□ 1.1
COL18A1P39060 CTBP2P3-201ENST00000585629 1255 ntBASIC21.94■■□□□ 1.1
COL18A1P39060 TEX48-202ENST00000612244 662 ntTSL 3 BASIC21.94■■□□□ 1.1
COL18A1P39060 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.94■■□□□ 1.1
COL18A1P39060 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL18A1P39060 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
COL18A1P39060 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC21.93■■□□□ 1.1
COL18A1P39060 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 AC008735.3-201ENST00000596646 500 ntBASIC21.93■■□□□ 1.1
COL18A1P39060 AL109936.8-201ENST00000641772 604 ntBASIC21.93■■□□□ 1.1
COL18A1P39060 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL18A1P39060 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL18A1P39060 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL18A1P39060 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC21.92■■□□□ 1.1
COL18A1P39060 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC21.92■■□□□ 1.1
COL18A1P39060 SPDYE17-201ENST00000412399 783 ntBASIC21.92■■□□□ 1.1
COL18A1P39060 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
COL18A1P39060 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
COL18A1P39060 KRT17P8-201ENST00000540749 863 ntBASIC21.92■■□□□ 1.1
COL18A1P39060 Six3os1_5.1-201ENST00000611000 271 ntBASIC21.92■■□□□ 1.1
COL18A1P39060 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC21.92■■□□□ 1.1
COL18A1P39060 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC21.92■■□□□ 1.1
COL18A1P39060 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL18A1P39060 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC21.92■■□□□ 1.1
COL18A1P39060 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
COL18A1P39060 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL18A1P39060 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
COL18A1P39060 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC21.92■■□□□ 1.1
COL18A1P39060 AL391069.4-201ENST00000609583 481 ntBASIC21.92■■□□□ 1.1
COL18A1P39060 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL18A1P39060 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
COL18A1P39060 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC21.91■■□□□ 1.1
COL18A1P39060 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 AC087289.5-201ENST00000586076 3175 ntBASIC21.91■■□□□ 1.1
COL18A1P39060 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC21.91■■□□□ 1.1
COL18A1P39060 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.91■■□□□ 1.1
COL18A1P39060 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.91■■□□□ 1.1
COL18A1P39060 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.91■■□□□ 1.1
COL18A1P39060 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 AC092053.1-201ENST00000605787 1936 ntBASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms