Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 KRT43P-201ENST00000434019 910 ntBASIC17.26■□□□□ 0.35
VCANP13611 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.26■□□□□ 0.35
VCANP13611 SLC25A47P1-201ENST00000531577 414 ntBASIC17.26■□□□□ 0.35
VCANP13611 AC233724.13-201ENST00000598383 410 ntBASIC17.26■□□□□ 0.35
VCANP13611 AL133215.2-201ENST00000609242 977 ntBASIC17.26■□□□□ 0.35
VCANP13611 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 AL662890.1-201ENST00000396818 632 ntBASIC17.26■□□□□ 0.35
VCANP13611 SDHAP3-202ENST00000515467 728 ntBASIC17.26■□□□□ 0.35
VCANP13611 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.26■□□□□ 0.35
VCANP13611 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VCANP13611 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.26■□□□□ 0.35
VCANP13611 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VCANP13611 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
VCANP13611 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
VCANP13611 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.25■□□□□ 0.35
VCANP13611 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.25■□□□□ 0.35
VCANP13611 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 TPRX2P-201ENST00000535362 881 ntBASIC17.25■□□□□ 0.35
VCANP13611 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.25■□□□□ 0.35
VCANP13611 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
VCANP13611 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
VCANP13611 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 AC104784.1-201ENST00000473096 294 ntBASIC17.25■□□□□ 0.35
VCANP13611 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCANP13611 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.25■□□□□ 0.35
VCANP13611 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.25■□□□□ 0.35
VCANP13611 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.24■□□□□ 0.35
VCANP13611 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VCANP13611 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.24■□□□□ 0.35
VCANP13611 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 AC020765.3-201ENST00000613051 740 ntBASIC17.24■□□□□ 0.35
VCANP13611 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.24■□□□□ 0.35
VCANP13611 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VCANP13611 BCRP2-202ENST00000447763 634 ntBASIC17.24■□□□□ 0.35
VCANP13611 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.24■□□□□ 0.35
VCANP13611 UPF3AP2-201ENST00000457924 1132 ntBASIC17.24■□□□□ 0.35
VCANP13611 BCRP6-201ENST00000510112 632 ntBASIC17.24■□□□□ 0.35
VCANP13611 BCRP7-201ENST00000511549 544 ntBASIC17.24■□□□□ 0.35
VCANP13611 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.24■□□□□ 0.35
VCANP13611 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
VCANP13611 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.24■□□□□ 0.35
VCANP13611 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCANP13611 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.23■□□□□ 0.35
VCANP13611 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.23■□□□□ 0.35
VCANP13611 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 KRT18P66-201ENST00000452970 1269 ntBASIC17.23■□□□□ 0.35
VCANP13611 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.23■□□□□ 0.35
VCANP13611 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms