Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.97■□□□□ 0.63
COL11A1P12107 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL11A1P12107 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 AC018470.1-201ENST00000624790 3129 ntBASIC18.97■□□□□ 0.63
COL11A1P12107 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
COL11A1P12107 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.97■□□□□ 0.63
COL11A1P12107 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.97■□□□□ 0.63
COL11A1P12107 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.97■□□□□ 0.63
COL11A1P12107 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.97■□□□□ 0.63
COL11A1P12107 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL11A1P12107 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL11A1P12107 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.96■□□□□ 0.63
COL11A1P12107 AC010336.2-201ENST00000564226 506 ntBASIC18.96■□□□□ 0.63
COL11A1P12107 AC061975.2-201ENST00000581722 295 ntBASIC18.96■□□□□ 0.63
COL11A1P12107 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 AC008738.7-201ENST00000609744 511 ntBASIC18.96■□□□□ 0.63
COL11A1P12107 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.96■□□□□ 0.63
COL11A1P12107 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.96■□□□□ 0.63
COL11A1P12107 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.96■□□□□ 0.63
COL11A1P12107 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.96■□□□□ 0.63
COL11A1P12107 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL11A1P12107 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.95■□□□□ 0.62
COL11A1P12107 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.95■□□□□ 0.62
COL11A1P12107 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL11A1P12107 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 CETN4P-206ENST00000642099 2168 ntBASIC18.95■□□□□ 0.62
COL11A1P12107 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 MEIS3P1-201ENST00000495167 958 ntBASIC18.95■□□□□ 0.62
COL11A1P12107 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
COL11A1P12107 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 AC009118.2-201ENST00000613275 655 ntBASIC18.95■□□□□ 0.62
COL11A1P12107 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.95■□□□□ 0.62
COL11A1P12107 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL11A1P12107 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL11A1P12107 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL11A1P12107 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL11A1P12107 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL11A1P12107 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.94■□□□□ 0.62
COL11A1P12107 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL11A1P12107 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.94■□□□□ 0.62
COL11A1P12107 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.94■□□□□ 0.62
COL11A1P12107 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.94■□□□□ 0.62
COL11A1P12107 AL512361.1-201ENST00000554200 418 ntBASIC18.94■□□□□ 0.62
COL11A1P12107 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms