Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC22.12■■□□□ 1.13
COL3A1P02461 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
COL3A1P02461 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC22.12■■□□□ 1.13
COL3A1P02461 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC22.11■■□□□ 1.13
COL3A1P02461 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
COL3A1P02461 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC22.11■■□□□ 1.13
COL3A1P02461 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
COL3A1P02461 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC22.11■■□□□ 1.13
COL3A1P02461 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC22.11■■□□□ 1.13
COL3A1P02461 AC093724.1-201ENST00000448659 1027 ntBASIC22.11■■□□□ 1.13
COL3A1P02461 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC22.11■■□□□ 1.13
COL3A1P02461 KRT18P34-201ENST00000488218 1270 ntBASIC22.11■■□□□ 1.13
COL3A1P02461 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC22.11■■□□□ 1.13
COL3A1P02461 Z92544.3-201ENST00000624747 417 ntBASIC22.11■■□□□ 1.13
COL3A1P02461 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 AR-207ENST00000612010 3896 ntTSL 5 BASIC22.11■■□□□ 1.13
COL3A1P02461 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL3A1P02461 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
COL3A1P02461 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC22.1■■□□□ 1.13
COL3A1P02461 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC22.1■■□□□ 1.13
COL3A1P02461 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC22.1■■□□□ 1.13
COL3A1P02461 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC22.1■■□□□ 1.13
COL3A1P02461 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC22.1■■□□□ 1.13
COL3A1P02461 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
COL3A1P02461 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC22.1■■□□□ 1.13
COL3A1P02461 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
COL3A1P02461 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC22.1■■□□□ 1.13
COL3A1P02461 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL3A1P02461 AC005237.2-201ENST00000434368 219 ntBASIC22.09■■□□□ 1.13
COL3A1P02461 HMGN1P19-201ENST00000436976 333 ntBASIC22.09■■□□□ 1.13
COL3A1P02461 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC22.09■■□□□ 1.13
COL3A1P02461 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC22.09■■□□□ 1.13
COL3A1P02461 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC22.09■■□□□ 1.13
COL3A1P02461 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
COL3A1P02461 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC22.09■■□□□ 1.13
COL3A1P02461 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.09■■□□□ 1.13
COL3A1P02461 AL512356.2-201ENST00000546955 174 ntBASIC22.09■■□□□ 1.13
COL3A1P02461 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
COL3A1P02461 AC051619.7-201ENST00000568314 623 ntBASIC22.09■■□□□ 1.13
COL3A1P02461 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC22.09■■□□□ 1.13
COL3A1P02461 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC22.09■■□□□ 1.13
COL3A1P02461 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC22.09■■□□□ 1.13
COL3A1P02461 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC22.09■■□□□ 1.13
COL3A1P02461 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC22.09■■□□□ 1.13
COL3A1P02461 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 VMO1-203ENST00000416307 712 ntTSL 2 BASIC22.09■■□□□ 1.13
COL3A1P02461 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC22.09■■□□□ 1.13
COL3A1P02461 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL3A1P02461 BANF1P1-201ENST00000553684 263 ntBASIC22.09■■□□□ 1.13
COL3A1P02461 AC026150.2-201ENST00000564693 1156 ntBASIC22.09■■□□□ 1.13
COL3A1P02461 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
COL3A1P02461 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL3A1P02461 AGGF1P2-201ENST00000426656 2106 ntBASIC22.08■■□□□ 1.13
COL3A1P02461 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC22.08■■□□□ 1.13
COL3A1P02461 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC22.08■■□□□ 1.13
COL3A1P02461 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms