Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TOP3BO95985 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TOP3BO95985 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 MCCD1P2-201ENST00000423228 335 ntBASIC17.37■□□□□ 0.37
TOP3BO95985 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.37■□□□□ 0.37
TOP3BO95985 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.37■□□□□ 0.37
TOP3BO95985 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.37■□□□□ 0.37
TOP3BO95985 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TOP3BO95985 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
TOP3BO95985 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TOP3BO95985 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
TOP3BO95985 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TOP3BO95985 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.36■□□□□ 0.37
TOP3BO95985 AC008741.2-201ENST00000612792 3115 ntBASIC17.36■□□□□ 0.37
TOP3BO95985 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
TOP3BO95985 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.36■□□□□ 0.37
TOP3BO95985 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TOP3BO95985 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 AC011467.2-201ENST00000598425 242 ntBASIC17.36■□□□□ 0.37
TOP3BO95985 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.36■□□□□ 0.37
TOP3BO95985 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.36■□□□□ 0.37
TOP3BO95985 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.36■□□□□ 0.37
TOP3BO95985 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
TOP3BO95985 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TOP3BO95985 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.36■□□□□ 0.37
TOP3BO95985 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 LINC02012-201ENST00000608206 1725 ntBASIC17.35■□□□□ 0.37
TOP3BO95985 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TOP3BO95985 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 AC092068.3-201ENST00000587894 2016 ntBASIC17.35■□□□□ 0.37
TOP3BO95985 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.35■□□□□ 0.37
TOP3BO95985 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TOP3BO95985 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TOP3BO95985 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.35■□□□□ 0.37
TOP3BO95985 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.35■□□□□ 0.37
TOP3BO95985 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.35■□□□□ 0.37
TOP3BO95985 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.35■□□□□ 0.37
TOP3BO95985 AC092865.6-201ENST00000642101 219 ntBASIC17.35■□□□□ 0.37
TOP3BO95985 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TOP3BO95985 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.35■□□□□ 0.37
TOP3BO95985 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms