Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.02■□□□□ 0.63
CHMP2AO43633 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHMP2AO43633 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CHMP2AO43633 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
CHMP2AO43633 KRT8P49-201ENST00000604166 1432 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP2AO43633 MIR1233-2-201ENST00000408138 82 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 MIR1233-1-201ENST00000408722 82 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 DNAJB3-201ENST00000446806 729 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.01■□□□□ 0.63
CHMP2AO43633 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.01■□□□□ 0.63
CHMP2AO43633 AC005412.3-201ENST00000580309 715 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP2AO43633 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.01■□□□□ 0.63
CHMP2AO43633 MTDHP5-201ENST00000598980 586 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.01■□□□□ 0.63
CHMP2AO43633 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 SLC22A20-204ENST00000530038 1673 ntBASIC19.01■□□□□ 0.63
CHMP2AO43633 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP2AO43633 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CHMP2AO43633 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
CHMP2AO43633 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHMP2AO43633 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19■□□□□ 0.63
CHMP2AO43633 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
CHMP2AO43633 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19■□□□□ 0.63
CHMP2AO43633 RPSAP43-201ENST00000402237 625 ntBASIC19■□□□□ 0.63
CHMP2AO43633 MCCD1P2-201ENST00000423228 335 ntBASIC19■□□□□ 0.63
CHMP2AO43633 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 AC074386.1-202ENST00000463561 864 ntBASIC19■□□□□ 0.63
CHMP2AO43633 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19■□□□□ 0.63
CHMP2AO43633 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 MED16-214ENST00000617672 554 ntTSL 5 BASIC19■□□□□ 0.63
CHMP2AO43633 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 PCDHB17P-201ENST00000539533 2393 ntBASIC19■□□□□ 0.63
CHMP2AO43633 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP2AO43633 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19■□□□□ 0.63
CHMP2AO43633 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 UPF3AP3-201ENST00000420996 769 ntBASIC18.99■□□□□ 0.63
CHMP2AO43633 AC112482.1-201ENST00000492080 688 ntBASIC18.99■□□□□ 0.63
CHMP2AO43633 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.99■□□□□ 0.63
CHMP2AO43633 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.99■□□□□ 0.63
CHMP2AO43633 MIR3687-2-201ENST00000577708 61 ntBASIC18.99■□□□□ 0.63
CHMP2AO43633 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 MIR3687-1-201ENST00000614492 61 ntBASIC18.99■□□□□ 0.63
CHMP2AO43633 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms