Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 MIR600HG-201ENST00000449175 5984 ntBASIC12.42□□□□□ -0.42
SMKR1H3BMG3 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 INGX-201ENST00000359239 846 ntBASIC12.42□□□□□ -0.42
SMKR1H3BMG3 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 AC090192.1-201ENST00000517740 490 ntBASIC12.42□□□□□ -0.42
SMKR1H3BMG3 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 LINC02228-204ENST00000642115 2962 ntBASIC12.42□□□□□ -0.42
SMKR1H3BMG3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 FRMD8P1-201ENST00000440433 1524 ntBASIC12.42□□□□□ -0.42
SMKR1H3BMG3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
SMKR1H3BMG3 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AC109462.3-201ENST00000573934 613 ntBASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AP000525.1-201ENST00000608286 694 ntBASIC12.41□□□□□ -0.42
SMKR1H3BMG3 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 AC126177.1-201ENST00000547829 2218 ntBASIC12.41□□□□□ -0.42
SMKR1H3BMG3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.41□□□□□ -0.42
SMKR1H3BMG3 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC12.4□□□□□ -0.42
SMKR1H3BMG3 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms