Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.06■□□□□ 0.16
AP4S1Q9Y587 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 FLJ16779-201ENST00000612722 7638 ntBASIC16.06■□□□□ 0.16
AP4S1Q9Y587 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 RBM17P1-201ENST00000453646 1190 ntBASIC16.06■□□□□ 0.16
AP4S1Q9Y587 AL512604.3-201ENST00000569583 964 ntBASIC16.06■□□□□ 0.16
AP4S1Q9Y587 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 AL596087.1-201ENST00000400979 1969 ntBASIC16.06■□□□□ 0.16
AP4S1Q9Y587 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4S1Q9Y587 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AC068472.1-201ENST00000474589 881 ntBASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 FITM1-202ENST00000559294 800 ntBASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AL049637.2-201ENST00000641778 930 ntBASIC16.05■□□□□ 0.16
AP4S1Q9Y587 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4S1Q9Y587 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 AL603832.2-201ENST00000566195 2125 ntBASIC16.04■□□□□ 0.16
AP4S1Q9Y587 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4S1Q9Y587 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms