Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 RPSAP43-201ENST00000402237 625 ntBASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 FGFR3P6-201ENST00000457012 610 ntBASIC16.46■□□□□ 0.23
VPS4AQ9UN37 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC145285.3-201ENST00000564603 959 ntBASIC16.46■□□□□ 0.23
VPS4AQ9UN37 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC019129.2-201ENST00000609837 1235 ntBASIC16.46■□□□□ 0.23
VPS4AQ9UN37 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC046185.3-201ENST00000623228 1824 ntBASIC16.46■□□□□ 0.23
VPS4AQ9UN37 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS4AQ9UN37 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS4AQ9UN37 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS4AQ9UN37 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 AC018695.7-201ENST00000624587 2492 ntBASIC16.45■□□□□ 0.22
VPS4AQ9UN37 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 GPX1P2-201ENST00000429271 606 ntBASIC16.45■□□□□ 0.22
VPS4AQ9UN37 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 AC125634.1-201ENST00000438758 1403 ntBASIC16.45■□□□□ 0.22
VPS4AQ9UN37 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4AQ9UN37 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 SLC25A1P3-201ENST00000395415 828 ntBASIC16.44■□□□□ 0.22
VPS4AQ9UN37 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 HNRNPDP1-201ENST00000439535 754 ntBASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AC004967.1-201ENST00000453589 447 ntBASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AC122714.2-201ENST00000502787 707 ntBASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AC040169.1-201ENST00000565382 521 ntBASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4AQ9UN37 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms