Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 PCDHA12-202ENST00000613593 2588 ntBASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 AC005915.1-201ENST00000624912 2018 ntBASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CUEDC1Q9NWM3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AC009947.1-201ENST00000444350 727 ntBASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AC108751.1-201ENST00000490852 363 ntBASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AC004790.2-201ENST00000623588 572 ntBASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CUEDC1Q9NWM3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CUEDC1Q9NWM3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 AC002310.6-201ENST00000624451 1377 ntBASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CUEDC1Q9NWM3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.38■□□□□ 0.21
CUEDC1Q9NWM3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.38■□□□□ 0.21
CUEDC1Q9NWM3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.38■□□□□ 0.21
CUEDC1Q9NWM3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CUEDC1Q9NWM3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CUEDC1Q9NWM3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms