Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 MRPL20P1-201ENST00000400819 433 ntBASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 AC009947.1-201ENST00000444350 727 ntBASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 AC092171.3-201ENST00000610122 2651 ntBASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 MIR4751-201ENST00000578027 74 ntBASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 AL391256.1-201ENST00000443260 1855 ntBASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 AL603756.1-201ENST00000606511 2163 ntBASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC4Q9NTJ3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 AC084018.2-201ENST00000613093 2607 ntBASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.71■■□□□ 1.07
SMC4Q9NTJ3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
SMC4Q9NTJ3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 AP002490.2-201ENST00000524791 560 ntBASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms