Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
UPF3BQ9BZI7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
UPF3BQ9BZI7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
UPF3BQ9BZI7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPF3BQ9BZI7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
UPF3BQ9BZI7 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC20.25■□□□□ 0.83
UPF3BQ9BZI7 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 KRT18P31-201ENST00000506277 1292 ntBASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UPF3BQ9BZI7 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 DOC2GP-204ENST00000639052 2548 ntBASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 AC243591.1-201ENST00000452967 1364 ntBASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 MTDHP3-201ENST00000594186 672 ntBASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TUBB8P12-201ENST00000308911 1335 ntBASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TUBB7P-202ENST00000428444 1305 ntBASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 TUBB8P7-204ENST00000567960 1332 ntBASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UPF3BQ9BZI7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 AL356309.3-201ENST00000624132 1934 ntBASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 PRYP5-201ENST00000451909 266 ntBASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 SART3-203ENST00000546611 1184 ntBASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 AL022326.1-202ENST00000641533 845 ntBASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.22■□□□□ 0.83
UPF3BQ9BZI7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms