Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 ACTL9-202ENST00000612068 1252 ntBASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 AC005915.1-201ENST00000624912 2018 ntBASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.5■□□□□ 0.87
RPAP1Q9BWH6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 AC105020.1-201ENST00000435356 2205 ntBASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 NEK7-201ENST00000367383 586 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 MIR3197-201ENST00000582241 73 ntBASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RPAP1Q9BWH6 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RPAP1Q9BWH6 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 UBALD1-205ENST00000590891 2641 ntBASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 FRMD8P1-201ENST00000440433 1524 ntBASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 AL139400.1-201ENST00000366220 510 ntBASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 FAM185BP-201ENST00000443595 716 ntBASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 AC093028.1-201ENST00000622998 982 ntBASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms