Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 AL356309.3-201ENST00000624132 1934 ntBASIC16.07■□□□□ 0.16
COL21A1Q96P44 AL603756.1-201ENST00000606511 2163 ntBASIC16.07■□□□□ 0.16
COL21A1Q96P44 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.07■□□□□ 0.16
COL21A1Q96P44 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL21A1Q96P44 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL21A1Q96P44 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL21A1Q96P44 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
COL21A1Q96P44 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 AL135999.2-201ENST00000622438 1686 ntBASIC16.06■□□□□ 0.16
COL21A1Q96P44 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 EGFEM1P-202ENST00000431685 1563 ntBASIC16.06■□□□□ 0.16
COL21A1Q96P44 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 TPM4P1-201ENST00000436100 807 ntBASIC16.06■□□□□ 0.16
COL21A1Q96P44 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 SIGLEC30P-201ENST00000455569 941 ntBASIC16.06■□□□□ 0.16
COL21A1Q96P44 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 AC073592.4-201ENST00000623827 446 ntBASIC16.06■□□□□ 0.16
COL21A1Q96P44 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 AL391005.1-201ENST00000623953 2435 ntBASIC16.06■□□□□ 0.16
COL21A1Q96P44 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.06■□□□□ 0.16
COL21A1Q96P44 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL21A1Q96P44 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 AC124947.2-201ENST00000547118 1133 ntBASIC16.05■□□□□ 0.16
COL21A1Q96P44 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL21A1Q96P44 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.05■□□□□ 0.16
COL21A1Q96P44 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms