Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC54Q8NEL0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.83□□□□□ -0.03
CCDC54Q8NEL0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC54Q8NEL0 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC54Q8NEL0 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC54Q8NEL0 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC54Q8NEL0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 SPDYE21P-201ENST00000413323 827 ntBASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 IGHV3-47-201ENST00000425060 335 ntBASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 AC091607.1-201ENST00000490318 1060 ntBASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 BNIP3P18-201ENST00000593976 575 ntBASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 AC092329.2-201ENST00000598402 547 ntBASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 AL590326.2-201ENST00000625139 305 ntBASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC54Q8NEL0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 TOB2P1-201ENST00000469761 992 ntBASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 AC073592.4-201ENST00000623827 446 ntBASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC54Q8NEL0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms