Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 KRT18P48-201ENST00000434763 852 ntBASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 KRT18P38-201ENST00000449496 1282 ntBASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AC024909.3-201ENST00000611513 2257 ntBASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AC113404.2-201ENST00000507884 177 ntBASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AC124947.2-201ENST00000547118 1133 ntBASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
ZNF540Q8NDQ6 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
ZNF540Q8NDQ6 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.77■□□□□ 0.11
ZNF540Q8NDQ6 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
ZNF540Q8NDQ6 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ZNF540Q8NDQ6 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ZNF540Q8NDQ6 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 RASA4DP-201ENST00000460726 1199 ntBASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms