Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 AD000864.1-201ENST00000624076 2295 ntBASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 CRYGEP-201ENST00000412192 528 ntBASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 AC034105.1-201ENST00000563488 319 ntBASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NUP54Q7Z3B4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 AL022342.1-201ENST00000400363 863 ntBASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 SLC25A1P1-201ENST00000528351 927 ntBASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 FRMD8P1-201ENST00000440433 1524 ntBASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NUP54Q7Z3B4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 VN2R19P-201ENST00000442399 1052 ntBASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 AC087163.2-201ENST00000457299 853 ntBASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 MIR4751-201ENST00000578027 74 ntBASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 AC010654.1-201ENST00000615722 808 ntBASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms