Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.29■□□□□ 0.52
KRT39Q6A163 AC129492.6-201ENST00000611383 1305 ntBASIC18.29■□□□□ 0.52
KRT39Q6A163 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
KRT39Q6A163 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
KRT39Q6A163 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.29■□□□□ 0.52
KRT39Q6A163 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.29■□□□□ 0.52
KRT39Q6A163 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
KRT39Q6A163 AC107918.2-201ENST00000530817 355 ntBASIC18.29■□□□□ 0.52
KRT39Q6A163 AC013467.2-201ENST00000605472 835 ntBASIC18.29■□□□□ 0.52
KRT39Q6A163 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.29■□□□□ 0.52
KRT39Q6A163 AC004790.2-201ENST00000623588 572 ntBASIC18.29■□□□□ 0.52
KRT39Q6A163 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.29■□□□□ 0.52
KRT39Q6A163 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
KRT39Q6A163 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.29■□□□□ 0.52
KRT39Q6A163 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
KRT39Q6A163 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.29■□□□□ 0.52
KRT39Q6A163 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.29■□□□□ 0.52
KRT39Q6A163 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.28■□□□□ 0.52
KRT39Q6A163 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 AC006277.1-201ENST00000624348 1610 ntBASIC18.28■□□□□ 0.52
KRT39Q6A163 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.28■□□□□ 0.52
KRT39Q6A163 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.28■□□□□ 0.52
KRT39Q6A163 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.28■□□□□ 0.52
KRT39Q6A163 IGHV3-22-201ENST00000520721 359 ntBASIC18.28■□□□□ 0.52
KRT39Q6A163 MPDU1-223ENST00000582151 728 ntBASIC18.28■□□□□ 0.52
KRT39Q6A163 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.28■□□□□ 0.52
KRT39Q6A163 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.28■□□□□ 0.52
KRT39Q6A163 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
KRT39Q6A163 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.28■□□□□ 0.52
KRT39Q6A163 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
KRT39Q6A163 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.28■□□□□ 0.52
KRT39Q6A163 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
KRT39Q6A163 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.27■□□□□ 0.52
KRT39Q6A163 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
KRT39Q6A163 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 FDX1P1-201ENST00000449115 551 ntBASIC18.27■□□□□ 0.52
KRT39Q6A163 AC108751.1-201ENST00000490852 363 ntBASIC18.27■□□□□ 0.52
KRT39Q6A163 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.27■□□□□ 0.52
KRT39Q6A163 UNC93B6-202ENST00000528242 690 ntBASIC18.27■□□□□ 0.52
KRT39Q6A163 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.27■□□□□ 0.52
KRT39Q6A163 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.27■□□□□ 0.52
KRT39Q6A163 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.27■□□□□ 0.52
KRT39Q6A163 OR7E47P-204ENST00000575924 449 ntBASIC18.27■□□□□ 0.52
KRT39Q6A163 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.27■□□□□ 0.52
KRT39Q6A163 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.27■□□□□ 0.52
KRT39Q6A163 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
KRT39Q6A163 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.27■□□□□ 0.51
KRT39Q6A163 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
KRT39Q6A163 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.27■□□□□ 0.51
KRT39Q6A163 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.27■□□□□ 0.51
KRT39Q6A163 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
KRT39Q6A163 AL603756.1-201ENST00000606511 2163 ntBASIC18.27■□□□□ 0.51
KRT39Q6A163 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
KRT39Q6A163 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms