Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AP005018.1-201ENST00000525475 301 ntBASIC19.14■□□□□ 0.65
CCNA1P78396 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC19.14■□□□□ 0.65
CCNA1P78396 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.14■□□□□ 0.65
CCNA1P78396 CR383656.12-201ENST00000549567 513 ntBASIC19.14■□□□□ 0.65
CCNA1P78396 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCNA1P78396 MIR4492-201ENST00000581627 80 ntBASIC19.14■□□□□ 0.65
CCNA1P78396 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCNA1P78396 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCNA1P78396 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCNA1P78396 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCNA1P78396 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 AC022144.1-201ENST00000602255 1580 ntBASIC19.14■□□□□ 0.65
CCNA1P78396 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCNA1P78396 LINC00895-201ENST00000629028 1637 ntBASIC19.14■□□□□ 0.65
CCNA1P78396 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCNA1P78396 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
CCNA1P78396 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCNA1P78396 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.13■□□□□ 0.65
CCNA1P78396 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC19.13■□□□□ 0.65
CCNA1P78396 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.13■□□□□ 0.65
CCNA1P78396 MRPS18AP1-201ENST00000414458 589 ntBASIC19.13■□□□□ 0.65
CCNA1P78396 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.13■□□□□ 0.65
CCNA1P78396 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC19.13■□□□□ 0.65
CCNA1P78396 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.13■□□□□ 0.65
CCNA1P78396 HLA-V-204ENST00000476601 1289 ntBASIC19.13■□□□□ 0.65
CCNA1P78396 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
CCNA1P78396 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.13■□□□□ 0.65
CCNA1P78396 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC19.13■□□□□ 0.65
CCNA1P78396 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 AC004233.3-201ENST00000607794 1269 ntBASIC19.13■□□□□ 0.65
CCNA1P78396 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.13■□□□□ 0.65
CCNA1P78396 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 FRMD8P1-201ENST00000440433 1524 ntBASIC19.13■□□□□ 0.65
CCNA1P78396 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.13■□□□□ 0.65
CCNA1P78396 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCNA1P78396 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CCNA1P78396 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCNA1P78396 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
CCNA1P78396 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 LINC00896-202ENST00000609602 2128 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
CCNA1P78396 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 AL035456.1-201ENST00000456064 1369 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 TDG-209ENST00000544861 1387 ntTSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 HLA-H-201ENST00000383620 1096 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 SLC25A1P3-201ENST00000395415 828 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 TSSK5P-201ENST00000423978 907 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 SPDYE22P-201ENST00000582158 798 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 AL662799.1-202ENST00000614205 422 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 SPDYE12P-201ENST00000618416 771 ntBASIC19.12■□□□□ 0.65
CCNA1P78396 GPER1-207ENST00000619052 571 ntTSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.12■□□□□ 0.65
CCNA1P78396 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.12■□□□□ 0.65
CCNA1P78396 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCNA1P78396 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CCNA1P78396 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCNA1P78396 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCNA1P78396 AC135050.7-201ENST00000624508 2218 ntBASIC19.11■□□□□ 0.65
CCNA1P78396 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCNA1P78396 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCNA1P78396 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.11■□□□□ 0.65
CCNA1P78396 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.11■□□□□ 0.65
CCNA1P78396 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.11■□□□□ 0.65
CCNA1P78396 PRYP6-201ENST00000514804 343 ntBASIC19.11■□□□□ 0.65
CCNA1P78396 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCNA1P78396 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC19.11■□□□□ 0.65
CCNA1P78396 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.11■□□□□ 0.65
CCNA1P78396 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.11■□□□□ 0.65
CCNA1P78396 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.11■□□□□ 0.65
CCNA1P78396 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.11■□□□□ 0.65
CCNA1P78396 AL138828.2-201ENST00000615812 383 ntBASIC19.11■□□□□ 0.65
CCNA1P78396 AC025048.6-201ENST00000634326 1161 ntBASIC19.11■□□□□ 0.65
CCNA1P78396 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCNA1P78396 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCNA1P78396 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms