Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.55□□□□□ -0.08
ABCA4P78363 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.55□□□□□ -0.08
ABCA4P78363 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 UGT1A2P-201ENST00000454886 866 ntBASIC14.55□□□□□ -0.08
ABCA4P78363 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 AC026150.2-201ENST00000564693 1156 ntBASIC14.55□□□□□ -0.08
ABCA4P78363 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
ABCA4P78363 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ABCA4P78363 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
ABCA4P78363 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 AL390754.1-201ENST00000619088 582 ntBASIC14.54□□□□□ -0.08
ABCA4P78363 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
ABCA4P78363 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
ABCA4P78363 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 KLF2P3-201ENST00000451977 1087 ntBASIC14.54□□□□□ -0.08
ABCA4P78363 AC079140.1-201ENST00000508039 487 ntBASIC14.54□□□□□ -0.08
ABCA4P78363 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.54□□□□□ -0.08
ABCA4P78363 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.54□□□□□ -0.08
ABCA4P78363 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ABCA4P78363 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.54□□□□□ -0.08
ABCA4P78363 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.53□□□□□ -0.08
ABCA4P78363 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.53□□□□□ -0.08
ABCA4P78363 TSSK5P-201ENST00000423978 907 ntBASIC14.53□□□□□ -0.08
ABCA4P78363 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.53□□□□□ -0.08
ABCA4P78363 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms