Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.83□□□□□ -0.2
LMO4P61968 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 ALG1L8P-201ENST00000533887 760 ntBASIC13.83□□□□□ -0.2
LMO4P61968 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
LMO4P61968 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.83□□□□□ -0.2
LMO4P61968 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 AC008677.1-201ENST00000519230 1561 ntBASIC13.83□□□□□ -0.2
LMO4P61968 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
LMO4P61968 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC13.83□□□□□ -0.2
LMO4P61968 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMO4P61968 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
LMO4P61968 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
LMO4P61968 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.82□□□□□ -0.2
LMO4P61968 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 SPDYE7P-202ENST00000420373 878 ntBASIC13.82□□□□□ -0.2
LMO4P61968 AC055876.3-201ENST00000431496 288 ntBASIC13.82□□□□□ -0.2
LMO4P61968 KLF2P3-201ENST00000451977 1087 ntBASIC13.82□□□□□ -0.2
LMO4P61968 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.82□□□□□ -0.2
LMO4P61968 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.82□□□□□ -0.2
LMO4P61968 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.82□□□□□ -0.2
LMO4P61968 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.82□□□□□ -0.2
LMO4P61968 AC013467.2-201ENST00000605472 835 ntBASIC13.82□□□□□ -0.2
LMO4P61968 AC138649.4-201ENST00000612222 287 ntBASIC13.82□□□□□ -0.2
LMO4P61968 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.82□□□□□ -0.2
LMO4P61968 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
LMO4P61968 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC13.82□□□□□ -0.2
LMO4P61968 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LMO4P61968 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMO4P61968 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.81□□□□□ -0.2
LMO4P61968 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LMO4P61968 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
LMO4P61968 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
LMO4P61968 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.81□□□□□ -0.2
LMO4P61968 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.81□□□□□ -0.2
LMO4P61968 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.81□□□□□ -0.2
LMO4P61968 KRT18P34-201ENST00000488218 1270 ntBASIC13.81□□□□□ -0.2
LMO4P61968 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMO4P61968 RNA5SP421-201ENST00000516864 134 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms