Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.72■□□□□ 0.43
HDAC4P56524 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC4P56524 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HDAC4P56524 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
HDAC4P56524 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
HDAC4P56524 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.72■□□□□ 0.43
HDAC4P56524 TUBB8P12-201ENST00000308911 1335 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 TUBB7P-202ENST00000428444 1305 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 TUBB8P7-204ENST00000567960 1332 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HDAC4P56524 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HDAC4P56524 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HDAC4P56524 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HDAC4P56524 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.71■□□□□ 0.43
HDAC4P56524 AL662844.1-201ENST00000546340 181 ntBASIC17.71■□□□□ 0.43
HDAC4P56524 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.71■□□□□ 0.43
HDAC4P56524 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.71■□□□□ 0.43
HDAC4P56524 AP001005.1-201ENST00000571755 1248 ntBASIC17.71■□□□□ 0.43
HDAC4P56524 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 AC116407.3-201ENST00000623905 1129 ntBASIC17.71■□□□□ 0.43
HDAC4P56524 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HDAC4P56524 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC4P56524 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HDAC4P56524 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.71■□□□□ 0.43
HDAC4P56524 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.71■□□□□ 0.43
HDAC4P56524 AL645728.1-201ENST00000366221 2101 ntBASIC17.71■□□□□ 0.42
HDAC4P56524 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
HDAC4P56524 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
HDAC4P56524 FLJ38576-201ENST00000623820 2459 ntBASIC17.71■□□□□ 0.42
HDAC4P56524 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.42
HDAC4P56524 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
HDAC4P56524 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.7■□□□□ 0.42
HDAC4P56524 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HDAC4P56524 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.7■□□□□ 0.42
HDAC4P56524 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.7■□□□□ 0.42
HDAC4P56524 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC4P56524 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HDAC4P56524 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HDAC4P56524 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HDAC4P56524 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.7■□□□□ 0.42
HDAC4P56524 AC092910.1-201ENST00000482027 1129 ntBASIC17.7■□□□□ 0.42
HDAC4P56524 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.7■□□□□ 0.42
HDAC4P56524 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC4P56524 REXO1L3P-201ENST00000622202 1288 ntBASIC17.7■□□□□ 0.42
HDAC4P56524 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC4P56524 KRT8P49-201ENST00000604166 1432 ntBASIC17.7■□□□□ 0.42
HDAC4P56524 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HDAC4P56524 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC4P56524 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 AL021920.2-201ENST00000624828 1351 ntBASIC17.69■□□□□ 0.42
HDAC4P56524 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HDAC4P56524 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HDAC4P56524 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms