Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NUP98P52948 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.81■□□□□ 0.92
NUP98P52948 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.81■□□□□ 0.92
NUP98P52948 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
NUP98P52948 AC061975.2-201ENST00000581722 295 ntBASIC20.81■□□□□ 0.92
NUP98P52948 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC20.81■□□□□ 0.92
NUP98P52948 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.81■□□□□ 0.92
NUP98P52948 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
NUP98P52948 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NUP98P52948 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.81■□□□□ 0.92
NUP98P52948 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NUP98P52948 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.81■□□□□ 0.92
NUP98P52948 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NUP98P52948 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.81■□□□□ 0.92
NUP98P52948 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.8■□□□□ 0.92
NUP98P52948 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
NUP98P52948 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.8■□□□□ 0.92
NUP98P52948 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
NUP98P52948 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20.8■□□□□ 0.92
NUP98P52948 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.8■□□□□ 0.92
NUP98P52948 GGT4P-201ENST00000623672 1708 ntBASIC20.8■□□□□ 0.92
NUP98P52948 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.8■□□□□ 0.92
NUP98P52948 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 RN7SL828P-201ENST00000607615 303 ntBASIC20.8■□□□□ 0.92
NUP98P52948 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.8■□□□□ 0.92
NUP98P52948 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NUP98P52948 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NUP98P52948 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.8■□□□□ 0.92
NUP98P52948 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NUP98P52948 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.79■□□□□ 0.92
NUP98P52948 COX5BP8-201ENST00000416911 349 ntBASIC20.79■□□□□ 0.92
NUP98P52948 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.79■□□□□ 0.92
NUP98P52948 AL512361.1-201ENST00000554200 418 ntBASIC20.79■□□□□ 0.92
NUP98P52948 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.79■□□□□ 0.92
NUP98P52948 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.79■□□□□ 0.92
NUP98P52948 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
NUP98P52948 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NUP98P52948 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NUP98P52948 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
NUP98P52948 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.79■□□□□ 0.92
NUP98P52948 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NUP98P52948 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NUP98P52948 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NUP98P52948 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NUP98P52948 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.79■□□□□ 0.92
NUP98P52948 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.78■□□□□ 0.92
NUP98P52948 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.78■□□□□ 0.92
NUP98P52948 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.78■□□□□ 0.92
NUP98P52948 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
NUP98P52948 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.78■□□□□ 0.92
NUP98P52948 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
NUP98P52948 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.78■□□□□ 0.92
NUP98P52948 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.78■□□□□ 0.92
NUP98P52948 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.78■□□□□ 0.92
NUP98P52948 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
NUP98P52948 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NUP98P52948 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.78■□□□□ 0.92
NUP98P52948 SPTLC1P1-201ENST00000447199 261 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms