Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXA1P49639 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXA1P49639 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
HOXA1P49639 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXA1P49639 GCSHP2-201ENST00000560971 527 ntBASIC14.13□□□□□ -0.15
HOXA1P49639 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.13□□□□□ -0.15
HOXA1P49639 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXA1P49639 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.13□□□□□ -0.15
HOXA1P49639 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXA1P49639 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXA1P49639 AC009154.2-201ENST00000621177 724 ntBASIC14.13□□□□□ -0.15
HOXA1P49639 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HOXA1P49639 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXA1P49639 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.13□□□□□ -0.15
HOXA1P49639 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXA1P49639 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 AC092171.3-201ENST00000610122 2651 ntBASIC14.12□□□□□ -0.15
HOXA1P49639 LINC01568-207ENST00000641790 1380 ntBASIC14.12□□□□□ -0.15
HOXA1P49639 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXA1P49639 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
HOXA1P49639 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXA1P49639 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 KRT18P48-201ENST00000434763 852 ntBASIC14.12□□□□□ -0.15
HOXA1P49639 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXA1P49639 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXA1P49639 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXA1P49639 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 MIR4497-201ENST00000583208 89 ntBASIC14.12□□□□□ -0.15
HOXA1P49639 AL136038.4-201ENST00000603606 1261 ntBASIC14.12□□□□□ -0.15
HOXA1P49639 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXA1P49639 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HOXA1P49639 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HOXA1P49639 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXA1P49639 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXA1P49639 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
HOXA1P49639 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
HOXA1P49639 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXA1P49639 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms