Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 DOC2GP-204ENST00000639052 2548 ntBASIC16.01■□□□□ 0.15
SOX3P41225 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16■□□□□ 0.15
SOX3P41225 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
SOX3P41225 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16■□□□□ 0.15
SOX3P41225 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SOX3P41225 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
SOX3P41225 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16■□□□□ 0.15
SOX3P41225 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16■□□□□ 0.15
SOX3P41225 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16■□□□□ 0.15
SOX3P41225 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16■□□□□ 0.15
SOX3P41225 KRT18P27-201ENST00000427733 1299 ntBASIC16■□□□□ 0.15
SOX3P41225 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16■□□□□ 0.15
SOX3P41225 RPL13AP23-201ENST00000480739 586 ntBASIC16■□□□□ 0.15
SOX3P41225 IGHV3-22-201ENST00000520721 359 ntBASIC16■□□□□ 0.15
SOX3P41225 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16■□□□□ 0.15
SOX3P41225 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16■□□□□ 0.15
SOX3P41225 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16■□□□□ 0.15
SOX3P41225 AL356488.2-201ENST00000602755 427 ntBASIC16■□□□□ 0.15
SOX3P41225 MIR1199-201ENST00000621445 119 ntBASIC16■□□□□ 0.15
SOX3P41225 AC004706.3-202ENST00000621574 984 ntBASIC16■□□□□ 0.15
SOX3P41225 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16■□□□□ 0.15
SOX3P41225 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16■□□□□ 0.15
SOX3P41225 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
SOX3P41225 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
SOX3P41225 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SOX3P41225 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
SOX3P41225 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX3P41225 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SOX3P41225 FLJ38576-201ENST00000623820 2459 ntBASIC16■□□□□ 0.15
SOX3P41225 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX3P41225 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.99■□□□□ 0.15
SOX3P41225 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.99■□□□□ 0.15
SOX3P41225 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 ELK2BP-201ENST00000415014 1224 ntBASIC15.99■□□□□ 0.15
SOX3P41225 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX3P41225 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX3P41225 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.99■□□□□ 0.15
SOX3P41225 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.99■□□□□ 0.15
SOX3P41225 AC117500.6-201ENST00000624871 588 ntBASIC15.99■□□□□ 0.15
SOX3P41225 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX3P41225 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.99■□□□□ 0.15
SOX3P41225 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX3P41225 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX3P41225 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 AL162727.3-201ENST00000635661 2787 ntBASIC15.98■□□□□ 0.15
SOX3P41225 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 LYSMD4-203ENST00000378904 2122 ntBASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms