Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.12□□□□□ -0.31
HOXD3P31249 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HOXD3P31249 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXD3P31249 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXD3P31249 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.12□□□□□ -0.31
HOXD3P31249 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXD3P31249 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXD3P31249 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXD3P31249 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXD3P31249 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXD3P31249 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HOXD3P31249 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXD3P31249 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXD3P31249 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXD3P31249 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HOXD3P31249 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
HOXD3P31249 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HOXD3P31249 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HOXD3P31249 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HOXD3P31249 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HOXD3P31249 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HOXD3P31249 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.11□□□□□ -0.31
HOXD3P31249 AC087163.2-201ENST00000457299 853 ntBASIC13.11□□□□□ -0.31
HOXD3P31249 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 AP002472.1-201ENST00000577490 586 ntBASIC13.11□□□□□ -0.31
HOXD3P31249 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXD3P31249 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXD3P31249 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HOXD3P31249 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXD3P31249 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXD3P31249 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 AC139713.2-201ENST00000641328 2723 ntBASIC13.1□□□□□ -0.31
HOXD3P31249 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HOXD3P31249 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.1□□□□□ -0.31
HOXD3P31249 FAM58CP-201ENST00000435741 640 ntBASIC13.1□□□□□ -0.31
HOXD3P31249 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.1□□□□□ -0.31
HOXD3P31249 AL031432.2-201ENST00000566714 459 ntBASIC13.1□□□□□ -0.31
HOXD3P31249 AL928711.1-201ENST00000570165 459 ntBASIC13.1□□□□□ -0.31
HOXD3P31249 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXD3P31249 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXD3P31249 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms