Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.47■□□□□ 0.55
RFX1P22670 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX1P22670 AC012640.2-201ENST00000561606 901 ntBASIC18.47■□□□□ 0.55
RFX1P22670 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.47■□□□□ 0.55
RFX1P22670 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.47■□□□□ 0.55
RFX1P22670 MIR1199-201ENST00000621445 119 ntBASIC18.47■□□□□ 0.55
RFX1P22670 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RFX1P22670 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
RFX1P22670 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 KRT18P28-201ENST00000453838 1332 ntBASIC18.47■□□□□ 0.55
RFX1P22670 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX1P22670 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.46■□□□□ 0.55
RFX1P22670 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.46■□□□□ 0.55
RFX1P22670 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
RFX1P22670 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RFX1P22670 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 LINC00982-205ENST00000420957 435 ntBASIC18.46■□□□□ 0.55
RFX1P22670 AC004832.2-201ENST00000426397 482 ntBASIC18.46■□□□□ 0.55
RFX1P22670 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.46■□□□□ 0.55
RFX1P22670 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RFX1P22670 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
RFX1P22670 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.46■□□□□ 0.55
RFX1P22670 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RFX1P22670 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.46■□□□□ 0.55
RFX1P22670 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.46■□□□□ 0.55
RFX1P22670 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
RFX1P22670 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.46■□□□□ 0.55
RFX1P22670 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.46■□□□□ 0.55
RFX1P22670 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX1P22670 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
RFX1P22670 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFX1P22670 AP002414.1-201ENST00000391405 1147 ntBASIC18.45■□□□□ 0.54
RFX1P22670 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 UNC93B6-202ENST00000528242 690 ntBASIC18.45■□□□□ 0.54
RFX1P22670 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 MTDHP4-201ENST00000600287 670 ntBASIC18.45■□□□□ 0.54
RFX1P22670 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
RFX1P22670 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
RFX1P22670 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.45■□□□□ 0.54
RFX1P22670 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.45■□□□□ 0.54
RFX1P22670 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
RFX1P22670 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.44■□□□□ 0.54
RFX1P22670 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
RFX1P22670 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
RFX1P22670 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.44■□□□□ 0.54
RFX1P22670 AL022326.1-202ENST00000641533 845 ntBASIC18.44■□□□□ 0.54
RFX1P22670 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
RFX1P22670 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFX1P22670 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.44■□□□□ 0.54
RFX1P22670 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms