Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.89■□□□□ 0.29
MSH3P20585 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.89■□□□□ 0.29
MSH3P20585 PAWRP1-201ENST00000451083 565 ntBASIC16.89■□□□□ 0.29
MSH3P20585 AC108751.1-201ENST00000490852 363 ntBASIC16.89■□□□□ 0.29
MSH3P20585 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 IGHV3-22-201ENST00000520721 359 ntBASIC16.89■□□□□ 0.29
MSH3P20585 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.89■□□□□ 0.29
MSH3P20585 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 BX640515.1-201ENST00000617215 977 ntBASIC16.89■□□□□ 0.29
MSH3P20585 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
MSH3P20585 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.89■□□□□ 0.29
MSH3P20585 AC011676.5-201ENST00000624864 2660 ntBASIC16.89■□□□□ 0.29
MSH3P20585 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
MSH3P20585 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
MSH3P20585 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH3P20585 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH3P20585 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH3P20585 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 AC108073.2-201ENST00000464002 357 ntBASIC16.88■□□□□ 0.29
MSH3P20585 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.88■□□□□ 0.29
MSH3P20585 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.88■□□□□ 0.29
MSH3P20585 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
MSH3P20585 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
MSH3P20585 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
MSH3P20585 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
MSH3P20585 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.88■□□□□ 0.29
MSH3P20585 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
MSH3P20585 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
MSH3P20585 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH3P20585 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 MRPL20P1-201ENST00000400819 433 ntBASIC16.87■□□□□ 0.29
MSH3P20585 RPL13AP23-201ENST00000480739 586 ntBASIC16.87■□□□□ 0.29
MSH3P20585 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.87■□□□□ 0.29
MSH3P20585 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 MIR4751-201ENST00000578027 74 ntBASIC16.87■□□□□ 0.29
MSH3P20585 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 AC004790.2-201ENST00000623588 572 ntBASIC16.87■□□□□ 0.29
MSH3P20585 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.87■□□□□ 0.29
MSH3P20585 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH3P20585 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH3P20585 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MSH3P20585 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
MSH3P20585 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms