Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL6A3P12111 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
COL6A3P12111 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.36■□□□□ 0.37
COL6A3P12111 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.36■□□□□ 0.37
COL6A3P12111 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 AL020996.1-203ENST00000536896 2307 ntBASIC17.36■□□□□ 0.37
COL6A3P12111 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL6A3P12111 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.36■□□□□ 0.37
COL6A3P12111 AL162726.2-201ENST00000438986 1017 ntBASIC17.36■□□□□ 0.37
COL6A3P12111 AC005077.2-201ENST00000449786 690 ntBASIC17.36■□□□□ 0.37
COL6A3P12111 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.36■□□□□ 0.37
COL6A3P12111 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.36■□□□□ 0.37
COL6A3P12111 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.36■□□□□ 0.37
COL6A3P12111 AC005357.2-202ENST00000590507 1060 ntBASIC17.36■□□□□ 0.37
COL6A3P12111 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 AL353732.1-201ENST00000569618 1459 ntBASIC17.36■□□□□ 0.37
COL6A3P12111 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A3P12111 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A3P12111 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A3P12111 AC046185.3-201ENST00000623228 1824 ntBASIC17.36■□□□□ 0.37
COL6A3P12111 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A3P12111 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL6A3P12111 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A3P12111 MAGEA5-201ENST00000446757 942 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 AC141586.1-203ENST00000567242 366 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL6A3P12111 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A3P12111 RN7SL818P-201ENST00000485099 259 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 FTLP10-202ENST00000505798 471 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A3P12111 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A3P12111 AC020914.3-201ENST00000594712 304 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL6A3P12111 RN7SL725P-201ENST00000606439 259 ntBASIC17.35■□□□□ 0.37
COL6A3P12111 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL6A3P12111 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
COL6A3P12111 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A3P12111 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A3P12111 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A3P12111 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 AL033527.5-202ENST00000641632 1098 ntBASIC17.34■□□□□ 0.37
COL6A3P12111 ANO7L1-203ENST00000602586 1720 ntBASIC17.34■□□□□ 0.37
COL6A3P12111 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A3P12111 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.34■□□□□ 0.37
COL6A3P12111 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A3P12111 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A3P12111 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
COL6A3P12111 FTH1P14-201ENST00000482930 551 ntBASIC17.34■□□□□ 0.37
COL6A3P12111 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A3P12111 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A3P12111 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A3P12111 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A3P12111 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A3P12111 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.34■□□□□ 0.37
COL6A3P12111 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A3P12111 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A3P12111 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A3P12111 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
COL6A3P12111 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.37
COL6A3P12111 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A3P12111 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.33■□□□□ 0.37
COL6A3P12111 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A3P12111 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A3P12111 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A3P12111 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.33■□□□□ 0.37
COL6A3P12111 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A3P12111 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms