Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 PCDHA14-201ENST00000506751 2298 ntBASIC19.99■□□□□ 0.79
HMGB1P09429 HLA-A-202ENST00000376806 1854 ntBASIC19.99■□□□□ 0.79
HMGB1P09429 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.98■□□□□ 0.79
HMGB1P09429 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HMGB1P09429 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
HMGB1P09429 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
HMGB1P09429 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HMGB1P09429 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.98■□□□□ 0.79
HMGB1P09429 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
HMGB1P09429 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
HMGB1P09429 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.98■□□□□ 0.79
HMGB1P09429 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.98■□□□□ 0.79
HMGB1P09429 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.98■□□□□ 0.79
HMGB1P09429 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.98■□□□□ 0.79
HMGB1P09429 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.98■□□□□ 0.79
HMGB1P09429 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.98■□□□□ 0.79
HMGB1P09429 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 AC006538.1-201ENST00000567905 1585 ntBASIC19.98■□□□□ 0.79
HMGB1P09429 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.98■□□□□ 0.79
HMGB1P09429 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 AL118508.1-201ENST00000613502 2345 ntBASIC19.98■□□□□ 0.79
HMGB1P09429 AC099398.1-201ENST00000567919 2776 ntBASIC19.98■□□□□ 0.79
HMGB1P09429 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 AP002414.3-201ENST00000589352 1468 ntBASIC19.98■□□□□ 0.79
HMGB1P09429 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.98■□□□□ 0.79
HMGB1P09429 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB1P09429 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HMGB1P09429 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.97■□□□□ 0.79
HMGB1P09429 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
HMGB1P09429 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 MIR4492-201ENST00000581627 80 ntBASIC19.97■□□□□ 0.79
HMGB1P09429 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.97■□□□□ 0.79
HMGB1P09429 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.97■□□□□ 0.79
HMGB1P09429 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.97■□□□□ 0.79
HMGB1P09429 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HMGB1P09429 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HMGB1P09429 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB1P09429 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
HMGB1P09429 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HMGB1P09429 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
HMGB1P09429 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
HMGB1P09429 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 AL031284.1-201ENST00000419297 478 ntBASIC19.96■□□□□ 0.79
HMGB1P09429 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 TPM4P1-201ENST00000436100 807 ntBASIC19.96■□□□□ 0.79
HMGB1P09429 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.96■□□□□ 0.79
HMGB1P09429 AC107918.2-201ENST00000530817 355 ntBASIC19.96■□□□□ 0.79
HMGB1P09429 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.96■□□□□ 0.79
HMGB1P09429 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB1P09429 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms