Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MPV17-206ENST00000402722 827 ntTSL 3 BASIC10.38□□□□□ -0.75
APOBP04114 AC133552.6-201ENST00000613406 534 ntBASIC10.38□□□□□ -0.75
APOBP04114 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 RBM39-205ENST00000397370 612 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC10.38□□□□□ -0.75
APOBP04114 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 TPRX2P-201ENST00000535362 881 ntBASIC10.38□□□□□ -0.75
APOBP04114 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC10.38□□□□□ -0.75
APOBP04114 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 SLC9A3P2-201ENST00000447821 2021 ntBASIC10.38□□□□□ -0.75
APOBP04114 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC10.38□□□□□ -0.75
APOBP04114 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC10.38□□□□□ -0.75
APOBP04114 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC10.38□□□□□ -0.75
APOBP04114 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 PXK-206ENST00000463280 2825 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC10.38□□□□□ -0.75
APOBP04114 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 BCRP2-202ENST00000447763 634 ntBASIC10.38□□□□□ -0.75
APOBP04114 AC108725.1-201ENST00000495472 409 ntBASIC10.38□□□□□ -0.75
APOBP04114 BCRP6-201ENST00000510112 632 ntBASIC10.38□□□□□ -0.75
APOBP04114 BCRP7-201ENST00000511549 544 ntBASIC10.38□□□□□ -0.75
APOBP04114 FAM86HP-204ENST00000513466 959 ntBASIC10.38□□□□□ -0.75
APOBP04114 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC10.38□□□□□ -0.75
APOBP04114 AC103810.3-201ENST00000583567 96 ntBASIC10.38□□□□□ -0.75
APOBP04114 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
APOBP04114 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC10.38□□□□□ -0.75
APOBP04114 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC10.37□□□□□ -0.75
APOBP04114 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
APOBP04114 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 AC005229.1-201ENST00000392885 409 ntBASIC10.37□□□□□ -0.75
APOBP04114 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC10.37□□□□□ -0.75
APOBP04114 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC10.37□□□□□ -0.75
APOBP04114 MIR5189-201ENST00000577370 114 ntBASIC10.37□□□□□ -0.75
APOBP04114 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC10.37□□□□□ -0.75
APOBP04114 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
APOBP04114 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
APOBP04114 AL021578.1-201ENST00000613646 709 ntBASIC10.37□□□□□ -0.75
APOBP04114 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 AL355312.1-201ENST00000407115 2176 ntBASIC10.37□□□□□ -0.75
APOBP04114 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
APOBP04114 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
APOBP04114 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC10.37□□□□□ -0.75
APOBP04114 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC10.37□□□□□ -0.75
APOBP04114 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
APOBP04114 AC104989.1-201ENST00000519711 778 ntBASIC10.37□□□□□ -0.75
APOBP04114 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC10.37□□□□□ -0.75
APOBP04114 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC10.37□□□□□ -0.75
APOBP04114 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC10.37□□□□□ -0.75
APOBP04114 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC10.37□□□□□ -0.75
APOBP04114 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC10.37□□□□□ -0.75
APOBP04114 LINC01451-201ENST00000623792 534 ntBASIC10.37□□□□□ -0.75
APOBP04114 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC10.37□□□□□ -0.75
APOBP04114 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC10.37□□□□□ -0.75
APOBP04114 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
APOBP04114 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 SNX33P1-201ENST00000592116 1762 ntBASIC10.37□□□□□ -0.75
APOBP04114 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 KRT18P55-202ENST00000578578 1546 ntBASIC10.37□□□□□ -0.75
APOBP04114 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
APOBP04114 RPS19-201ENST00000221975 500 ntTSL 3 BASIC10.37□□□□□ -0.75
APOBP04114 FADS2-205ENST00000517839 469 ntTSL 3 BASIC10.37□□□□□ -0.75
APOBP04114 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
APOBP04114 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
APOBP04114 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms