Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.78■□□□□ 0.44
APOEP02649 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 SLC25A1P3-201ENST00000395415 828 ntBASIC17.78■□□□□ 0.44
APOEP02649 MRPL20P1-201ENST00000400819 433 ntBASIC17.78■□□□□ 0.44
APOEP02649 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.78■□□□□ 0.44
APOEP02649 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.78■□□□□ 0.44
APOEP02649 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.78■□□□□ 0.44
APOEP02649 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.78■□□□□ 0.44
APOEP02649 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
APOEP02649 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
APOEP02649 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.78■□□□□ 0.44
APOEP02649 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
APOEP02649 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
APOEP02649 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.78■□□□□ 0.44
APOEP02649 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
APOEP02649 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
APOEP02649 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
APOEP02649 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
APOEP02649 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
APOEP02649 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
APOEP02649 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.77■□□□□ 0.44
APOEP02649 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
APOEP02649 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
APOEP02649 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.77■□□□□ 0.44
APOEP02649 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 AC034105.1-201ENST00000563488 319 ntBASIC17.77■□□□□ 0.44
APOEP02649 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.77■□□□□ 0.44
APOEP02649 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
APOEP02649 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.77■□□□□ 0.44
APOEP02649 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.77■□□□□ 0.44
APOEP02649 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
APOEP02649 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
APOEP02649 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
APOEP02649 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
APOEP02649 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
APOEP02649 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
APOEP02649 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.76■□□□□ 0.43
APOEP02649 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.76■□□□□ 0.43
APOEP02649 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
APOEP02649 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.76■□□□□ 0.43
APOEP02649 AP000347.1-202ENST00000435868 847 ntBASIC17.76■□□□□ 0.43
APOEP02649 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.76■□□□□ 0.43
APOEP02649 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.76■□□□□ 0.43
APOEP02649 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.76■□□□□ 0.43
APOEP02649 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
APOEP02649 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
APOEP02649 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
APOEP02649 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.76■□□□□ 0.43
APOEP02649 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
APOEP02649 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.76■□□□□ 0.43
APOEP02649 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
APOEP02649 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
APOEP02649 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
APOEP02649 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.75■□□□□ 0.43
APOEP02649 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.75■□□□□ 0.43
APOEP02649 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
APOEP02649 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
APOEP02649 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
APOEP02649 PRSS29P-201ENST00000440800 595 ntBASIC17.75■□□□□ 0.43
APOEP02649 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 PAWRP1-201ENST00000451083 565 ntBASIC17.75■□□□□ 0.43
APOEP02649 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
APOEP02649 AC010654.1-201ENST00000615722 808 ntBASIC17.75■□□□□ 0.43
APOEP02649 AC004790.2-201ENST00000623588 572 ntBASIC17.75■□□□□ 0.43
APOEP02649 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
APOEP02649 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
APOEP02649 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
APOEP02649 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms