Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21.1■□□□□ 0.97
CACNA1FO60840 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.1■□□□□ 0.97
CACNA1FO60840 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 PP14571-201ENST00000404327 934 ntTSL 2 BASIC21.1■□□□□ 0.97
CACNA1FO60840 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.1■□□□□ 0.97
CACNA1FO60840 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.1■□□□□ 0.97
CACNA1FO60840 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.1■□□□□ 0.97
CACNA1FO60840 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.1■□□□□ 0.97
CACNA1FO60840 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CACNA1FO60840 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.1■□□□□ 0.97
CACNA1FO60840 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CACNA1FO60840 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1FO60840 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.09■□□□□ 0.97
CACNA1FO60840 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC21.09■□□□□ 0.97
CACNA1FO60840 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC21.09■□□□□ 0.97
CACNA1FO60840 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CACNA1FO60840 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.09■□□□□ 0.97
CACNA1FO60840 NKG7-205ENST00000600427 520 ntTSL 3 BASIC21.09■□□□□ 0.97
CACNA1FO60840 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.09■□□□□ 0.97
CACNA1FO60840 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
CACNA1FO60840 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CACNA1FO60840 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.09■□□□□ 0.97
CACNA1FO60840 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CACNA1FO60840 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1FO60840 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CACNA1FO60840 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 AC142381.1-201ENST00000426099 345 ntBASIC21.08■□□□□ 0.97
CACNA1FO60840 HLA-J-203ENST00000494367 1087 ntBASIC21.08■□□□□ 0.97
CACNA1FO60840 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CACNA1FO60840 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CACNA1FO60840 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
CACNA1FO60840 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC21.08■□□□□ 0.97
CACNA1FO60840 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.08■□□□□ 0.97
CACNA1FO60840 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.08■□□□□ 0.97
CACNA1FO60840 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.08■□□□□ 0.97
CACNA1FO60840 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.08■□□□□ 0.97
CACNA1FO60840 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.08■□□□□ 0.97
CACNA1FO60840 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1FO60840 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1FO60840 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1FO60840 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1FO60840 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.08■□□□□ 0.96
CACNA1FO60840 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.08■□□□□ 0.96
CACNA1FO60840 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.08■□□□□ 0.96
CACNA1FO60840 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CACNA1FO60840 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1FO60840 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1FO60840 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
CACNA1FO60840 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
CACNA1FO60840 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1FO60840 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1FO60840 FAM58DP-201ENST00000428076 619 ntBASIC21.07■□□□□ 0.96
CACNA1FO60840 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1FO60840 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1FO60840 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.07■□□□□ 0.96
CACNA1FO60840 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1FO60840 KRT8P23-201ENST00000560090 1207 ntBASIC21.07■□□□□ 0.96
CACNA1FO60840 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.07■□□□□ 0.96
CACNA1FO60840 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1FO60840 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms