Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDCBPO00560 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDCBPO00560 PCED1CP-201ENST00000419887 785 ntBASIC14.48□□□□□ -0.09
SDCBPO00560 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.48□□□□□ -0.09
SDCBPO00560 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDCBPO00560 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC14.48□□□□□ -0.09
SDCBPO00560 AC124947.2-201ENST00000547118 1133 ntBASIC14.48□□□□□ -0.09
SDCBPO00560 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.48□□□□□ -0.09
SDCBPO00560 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.48□□□□□ -0.09
SDCBPO00560 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
SDCBPO00560 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC14.48□□□□□ -0.09
SDCBPO00560 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.48□□□□□ -0.09
SDCBPO00560 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.48□□□□□ -0.09
SDCBPO00560 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDCBPO00560 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDCBPO00560 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.48□□□□□ -0.09
SDCBPO00560 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SDCBPO00560 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.48□□□□□ -0.09
SDCBPO00560 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDCBPO00560 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.48□□□□□ -0.09
SDCBPO00560 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.48□□□□□ -0.09
SDCBPO00560 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC14.48□□□□□ -0.09
SDCBPO00560 IER3-202ENST00000376377 1350 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.09
SDCBPO00560 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 LINC00554-201ENST00000564841 3011 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 KRT18P1-202ENST00000452408 1331 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 CYP2T1P-202ENST00000641596 2535 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
SDCBPO00560 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 AL845331.1-201ENST00000424978 1190 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 AC246785.2-201ENST00000432512 513 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 TSSC2-201ENST00000450217 709 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.47□□□□□ -0.09
SDCBPO00560 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 AC005336.2-201ENST00000593183 939 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
SDCBPO00560 AL138831.2-201ENST00000606564 490 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 AL353801.3-201ENST00000609898 542 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.47□□□□□ -0.09
SDCBPO00560 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDCBPO00560 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SDCBPO00560 AC016734.2-201ENST00000624325 1377 ntBASIC14.47□□□□□ -0.09
SDCBPO00560 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.47□□□□□ -0.09
SDCBPO00560 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
SDCBPO00560 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.46□□□□□ -0.09
SDCBPO00560 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.46□□□□□ -0.09
SDCBPO00560 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SDCBPO00560 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.46□□□□□ -0.09
SDCBPO00560 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
SDCBPO00560 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
SDCBPO00560 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
SDCBPO00560 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDCBPO00560 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms