Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COMMD3-BMI1R4GMX3 AC087741.3-201ENST00000624270 1347 ntBASIC22.39■■□□□ 1.18
COMMD3-BMI1R4GMX3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
COMMD3-BMI1R4GMX3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.39■■□□□ 1.17
COMMD3-BMI1R4GMX3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
COMMD3-BMI1R4GMX3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COMMD3-BMI1R4GMX3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COMMD3-BMI1R4GMX3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COMMD3-BMI1R4GMX3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COMMD3-BMI1R4GMX3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COMMD3-BMI1R4GMX3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COMMD3-BMI1R4GMX3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
COMMD3-BMI1R4GMX3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COMMD3-BMI1R4GMX3 AL162393.1-201ENST00000437852 946 ntBASIC22.37■■□□□ 1.17
COMMD3-BMI1R4GMX3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.37■■□□□ 1.17
COMMD3-BMI1R4GMX3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COMMD3-BMI1R4GMX3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COMMD3-BMI1R4GMX3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.36■■□□□ 1.17
COMMD3-BMI1R4GMX3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
COMMD3-BMI1R4GMX3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COMMD3-BMI1R4GMX3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 AC022211.4-201ENST00000625094 2161 ntBASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COMMD3-BMI1R4GMX3 AP004609.3-201ENST00000610705 1884 ntBASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 AC097639.1-201ENST00000565519 1891 ntBASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COMMD3-BMI1R4GMX3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COMMD3-BMI1R4GMX3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COMMD3-BMI1R4GMX3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
COMMD3-BMI1R4GMX3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COMMD3-BMI1R4GMX3 DUSP8P5-201ENST00000422884 1815 ntBASIC22.33■■□□□ 1.16
COMMD3-BMI1R4GMX3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
COMMD3-BMI1R4GMX3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
COMMD3-BMI1R4GMX3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
COMMD3-BMI1R4GMX3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COMMD3-BMI1R4GMX3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC22.32■■□□□ 1.16
COMMD3-BMI1R4GMX3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC22.32■■□□□ 1.16
COMMD3-BMI1R4GMX3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COMMD3-BMI1R4GMX3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 AC044849.2-201ENST00000606596 710 ntBASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COMMD3-BMI1R4GMX3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.3■■□□□ 1.16
COMMD3-BMI1R4GMX3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COMMD3-BMI1R4GMX3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COMMD3-BMI1R4GMX3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COMMD3-BMI1R4GMX3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COMMD3-BMI1R4GMX3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
COMMD3-BMI1R4GMX3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 WHAMMP3-201ENST00000611636 1609 ntBASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COMMD3-BMI1R4GMX3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COMMD3-BMI1R4GMX3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COMMD3-BMI1R4GMX3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COMMD3-BMI1R4GMX3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
COMMD3-BMI1R4GMX3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
COMMD3-BMI1R4GMX3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.27■■□□□ 1.16
COMMD3-BMI1R4GMX3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COMMD3-BMI1R4GMX3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COMMD3-BMI1R4GMX3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms