Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.98■□□□□ 0.95
MMP28Q9H239 AC021231.2-201ENST00000594613 730 ntBASIC20.98■□□□□ 0.95
MMP28Q9H239 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP28Q9H239 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MMP28Q9H239 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP28Q9H239 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MMP28Q9H239 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
MMP28Q9H239 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MMP28Q9H239 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.97■□□□□ 0.95
MMP28Q9H239 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.97■□□□□ 0.95
MMP28Q9H239 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.97■□□□□ 0.95
MMP28Q9H239 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
MMP28Q9H239 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MMP28Q9H239 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.96■□□□□ 0.95
MMP28Q9H239 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.96■□□□□ 0.95
MMP28Q9H239 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MMP28Q9H239 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MMP28Q9H239 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.95■□□□□ 0.94
MMP28Q9H239 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.95■□□□□ 0.94
MMP28Q9H239 AC135983.2-203ENST00000454486 1613 ntBASIC20.95■□□□□ 0.94
MMP28Q9H239 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MMP28Q9H239 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MMP28Q9H239 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
MMP28Q9H239 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MMP28Q9H239 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
MMP28Q9H239 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MMP28Q9H239 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MMP28Q9H239 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
MMP28Q9H239 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MMP28Q9H239 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MMP28Q9H239 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MMP28Q9H239 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MMP28Q9H239 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MMP28Q9H239 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
MMP28Q9H239 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MMP28Q9H239 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MMP28Q9H239 HLA-V-202ENST00000446817 847 ntBASIC20.93■□□□□ 0.94
MMP28Q9H239 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MMP28Q9H239 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MMP28Q9H239 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
MMP28Q9H239 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.92■□□□□ 0.94
MMP28Q9H239 ZNRF2P2-203ENST00000454624 420 ntBASIC20.92■□□□□ 0.94
MMP28Q9H239 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.92■□□□□ 0.94
MMP28Q9H239 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.92■□□□□ 0.94
MMP28Q9H239 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.92■□□□□ 0.94
MMP28Q9H239 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.92■□□□□ 0.94
MMP28Q9H239 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MMP28Q9H239 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MMP28Q9H239 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
MMP28Q9H239 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.91■□□□□ 0.94
MMP28Q9H239 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.91■□□□□ 0.94
MMP28Q9H239 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MMP28Q9H239 AC010501.1-201ENST00000606270 1962 ntBASIC20.91■□□□□ 0.94
MMP28Q9H239 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.91■□□□□ 0.94
MMP28Q9H239 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
MMP28Q9H239 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 WHAMMP2-203ENST00000563942 1603 ntBASIC20.9■□□□□ 0.94
MMP28Q9H239 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.9■□□□□ 0.94
MMP28Q9H239 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MMP28Q9H239 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.9■□□□□ 0.94
MMP28Q9H239 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MMP28Q9H239 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
MMP28Q9H239 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP28Q9H239 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP28Q9H239 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP28Q9H239 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP28Q9H239 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP28Q9H239 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP28Q9H239 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.89■□□□□ 0.93
MMP28Q9H239 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.88■□□□□ 0.93
MMP28Q9H239 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
MMP28Q9H239 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP28Q9H239 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
MMP28Q9H239 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP28Q9H239 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP28Q9H239 LINC01124-201ENST00000409786 2117 ntBASIC20.87■□□□□ 0.93
MMP28Q9H239 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
MMP28Q9H239 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.87■□□□□ 0.93
MMP28Q9H239 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
MMP28Q9H239 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms