Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
LRCH3Q96II8 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
LRCH3Q96II8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.4■■□□□ 1.82
LRCH3Q96II8 SUDS3P1-201ENST00000505831 966 ntBASIC26.4■■□□□ 1.82
LRCH3Q96II8 AC022616.5-201ENST00000518796 181 ntBASIC26.4■■□□□ 1.82
LRCH3Q96II8 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.4■■□□□ 1.82
LRCH3Q96II8 AL031432.3-201ENST00000607698 485 ntBASIC26.4■■□□□ 1.82
LRCH3Q96II8 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.4■■□□□ 1.82
LRCH3Q96II8 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
LRCH3Q96II8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
LRCH3Q96II8 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.39■■□□□ 1.82
LRCH3Q96II8 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
LRCH3Q96II8 AL512631.2-201ENST00000604634 923 ntBASIC26.39■■□□□ 1.82
LRCH3Q96II8 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
LRCH3Q96II8 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.38■■□□□ 1.81
LRCH3Q96II8 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
LRCH3Q96II8 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
LRCH3Q96II8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
LRCH3Q96II8 AL162430.1-201ENST00000480705 870 ntBASIC26.37■■□□□ 1.81
LRCH3Q96II8 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.37■■□□□ 1.81
LRCH3Q96II8 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.37■■□□□ 1.81
LRCH3Q96II8 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
LRCH3Q96II8 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC26.36■■□□□ 1.81
LRCH3Q96II8 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
LRCH3Q96II8 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 AC090192.1-201ENST00000517740 490 ntBASIC26.36■■□□□ 1.81
LRCH3Q96II8 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.36■■□□□ 1.81
LRCH3Q96II8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.36■■□□□ 1.81
LRCH3Q96II8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.36■■□□□ 1.81
LRCH3Q96II8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRCH3Q96II8 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.35■■□□□ 1.81
LRCH3Q96II8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
LRCH3Q96II8 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
LRCH3Q96II8 MIR6821-201ENST00000617625 74 ntBASIC26.35■■□□□ 1.81
LRCH3Q96II8 AL359504.2-201ENST00000605506 1601 ntBASIC26.35■■□□□ 1.81
LRCH3Q96II8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
LRCH3Q96II8 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LRCH3Q96II8 AL135925.1-201ENST00000605920 1701 ntBASIC26.34■■□□□ 1.81
LRCH3Q96II8 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.34■■□□□ 1.81
LRCH3Q96II8 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LRCH3Q96II8 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
LRCH3Q96II8 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
LRCH3Q96II8 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
LRCH3Q96II8 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
LRCH3Q96II8 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
LRCH3Q96II8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
LRCH3Q96II8 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
LRCH3Q96II8 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
LRCH3Q96II8 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.31■■□□□ 1.8
LRCH3Q96II8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
LRCH3Q96II8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC26.31■■□□□ 1.8
LRCH3Q96II8 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.31■■□□□ 1.8
LRCH3Q96II8 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.31■■□□□ 1.8
LRCH3Q96II8 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
LRCH3Q96II8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LRCH3Q96II8 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.3■■□□□ 1.8
LRCH3Q96II8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
LRCH3Q96II8 AC120024.1-201ENST00000562672 995 ntBASIC26.3■■□□□ 1.8
LRCH3Q96II8 AC087623.3-201ENST00000607047 1098 ntBASIC26.3■■□□□ 1.8
LRCH3Q96II8 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
LRCH3Q96II8 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC26.29■■□□□ 1.8
LRCH3Q96II8 AC105265.2-201ENST00000467189 838 ntBASIC26.29■■□□□ 1.8
LRCH3Q96II8 MTDHP2-201ENST00000601468 714 ntBASIC26.29■■□□□ 1.8
LRCH3Q96II8 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.29■■□□□ 1.8
LRCH3Q96II8 RARRES2P11-201ENST00000635158 484 ntBASIC26.29■■□□□ 1.8
LRCH3Q96II8 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LRCH3Q96II8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.28■■□□□ 1.8
LRCH3Q96II8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LRCH3Q96II8 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LRCH3Q96II8 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
LRCH3Q96II8 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.28■■□□□ 1.8
LRCH3Q96II8 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.28■■□□□ 1.8
LRCH3Q96II8 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
LRCH3Q96II8 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
LRCH3Q96II8 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LRCH3Q96II8 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.27■■□□□ 1.8
LRCH3Q96II8 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC26.27■■□□□ 1.8
LRCH3Q96II8 AC097381.1-201ENST00000429019 1296 ntBASIC26.27■■□□□ 1.8
LRCH3Q96II8 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.27■■□□□ 1.8
LRCH3Q96II8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.27■■□□□ 1.8
LRCH3Q96II8 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
LRCH3Q96II8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.27■■□□□ 1.8
LRCH3Q96II8 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
LRCH3Q96II8 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LRCH3Q96II8 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
LRCH3Q96II8 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LRCH3Q96II8 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
LRCH3Q96II8 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
LRCH3Q96II8 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
LRCH3Q96II8 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
LRCH3Q96II8 AC100797.4-201ENST00000631653 1827 ntBASIC26.25■■□□□ 1.79
LRCH3Q96II8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
LRCH3Q96II8 UNC93B3-201ENST00000308076 687 ntBASIC26.24■■□□□ 1.79
LRCH3Q96II8 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
LRCH3Q96II8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms