Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.23■■□□□ 1.63
TTC28Q96AY4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.23■■□□□ 1.63
TTC28Q96AY4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC25.23■■□□□ 1.63
TTC28Q96AY4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TTC28Q96AY4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TTC28Q96AY4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
TTC28Q96AY4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.2■■□□□ 1.63
TTC28Q96AY4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
TTC28Q96AY4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
TTC28Q96AY4 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.2■■□□□ 1.62
TTC28Q96AY4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TTC28Q96AY4 AC024257.2-201ENST00000549699 147 ntBASIC25.19■■□□□ 1.62
TTC28Q96AY4 AC120024.1-201ENST00000562672 995 ntBASIC25.19■■□□□ 1.62
TTC28Q96AY4 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.19■■□□□ 1.62
TTC28Q96AY4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.19■■□□□ 1.62
TTC28Q96AY4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC25.19■■□□□ 1.62
TTC28Q96AY4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
TTC28Q96AY4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TTC28Q96AY4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.18■■□□□ 1.62
TTC28Q96AY4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
TTC28Q96AY4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
TTC28Q96AY4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
TTC28Q96AY4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TTC28Q96AY4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
TTC28Q96AY4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.17■■□□□ 1.62
TTC28Q96AY4 MIR4281-201ENST00000580852 62 ntBASIC25.17■■□□□ 1.62
TTC28Q96AY4 MTDHP2-201ENST00000601468 714 ntBASIC25.17■■□□□ 1.62
TTC28Q96AY4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.17■■□□□ 1.62
TTC28Q96AY4 MIR939-201ENST00000401314 82 ntBASIC25.17■■□□□ 1.62
TTC28Q96AY4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
TTC28Q96AY4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.17■■□□□ 1.62
TTC28Q96AY4 IKBKGP1-201ENST00000612193 1073 ntBASIC25.17■■□□□ 1.62
TTC28Q96AY4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.16■■□□□ 1.62
TTC28Q96AY4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TTC28Q96AY4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.16■■□□□ 1.62
TTC28Q96AY4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.16■■□□□ 1.62
TTC28Q96AY4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.16■■□□□ 1.62
TTC28Q96AY4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TTC28Q96AY4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
TTC28Q96AY4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.15■■□□□ 1.62
TTC28Q96AY4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.15■■□□□ 1.62
TTC28Q96AY4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.15■■□□□ 1.62
TTC28Q96AY4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TTC28Q96AY4 AC022517.1-201ENST00000592429 346 ntBASIC25.14■■□□□ 1.62
TTC28Q96AY4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.14■■□□□ 1.61
TTC28Q96AY4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
TTC28Q96AY4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
TTC28Q96AY4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
TTC28Q96AY4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
TTC28Q96AY4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
TTC28Q96AY4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TTC28Q96AY4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
TTC28Q96AY4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
TTC28Q96AY4 UNC93B3-201ENST00000308076 687 ntBASIC25.13■■□□□ 1.61
TTC28Q96AY4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TTC28Q96AY4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TTC28Q96AY4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TTC28Q96AY4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
TTC28Q96AY4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
TTC28Q96AY4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.12■■□□□ 1.61
TTC28Q96AY4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.12■■□□□ 1.61
TTC28Q96AY4 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TTC28Q96AY4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
TTC28Q96AY4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.12■■□□□ 1.61
TTC28Q96AY4 AC092437.1-201ENST00000624794 1048 ntBASIC25.12■■□□□ 1.61
TTC28Q96AY4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TTC28Q96AY4 AL136967.2-201ENST00000623968 743 ntBASIC25.11■■□□□ 1.61
TTC28Q96AY4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
TTC28Q96AY4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TTC28Q96AY4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.11■■□□□ 1.61
TTC28Q96AY4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.11■■□□□ 1.61
TTC28Q96AY4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
TTC28Q96AY4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.11■■□□□ 1.61
TTC28Q96AY4 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.11■■□□□ 1.61
TTC28Q96AY4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.11■■□□□ 1.61
TTC28Q96AY4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 AP001330.3-201ENST00000520123 633 ntBASIC25.1■■□□□ 1.61
TTC28Q96AY4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TTC28Q96AY4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
TTC28Q96AY4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
TTC28Q96AY4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
TTC28Q96AY4 AL136162.1-201ENST00000607711 1078 ntBASIC25.08■■□□□ 1.61
TTC28Q96AY4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
TTC28Q96AY4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
TTC28Q96AY4 AC034268.1-201ENST00000441047 882 ntBASIC25.07■■□□□ 1.6
TTC28Q96AY4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.07■■□□□ 1.6
TTC28Q96AY4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TTC28Q96AY4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
TTC28Q96AY4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
TTC28Q96AY4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.06■■□□□ 1.6
TTC28Q96AY4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
TTC28Q96AY4 AC091305.1-201ENST00000479476 895 ntBASIC25.06■■□□□ 1.6
TTC28Q96AY4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.06■■□□□ 1.6
TTC28Q96AY4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.05■■□□□ 1.6
TTC28Q96AY4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms