Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.315e-8■■■■□ 23.8
YBX3P16989 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.155e-8■■■■□ 23.8
YBX3P16989 KCNK4-209ENST00000541349 1450 ntTSL 1 (best)22.23■■□□□ 1.155e-8■■■■□ 23.8
YBX3P16989 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.77■□□□□ 0.285e-8■■■■□ 23.8
YBX3P16989 Y_RNA.467-201ENST00000384297 102 ntBASIC3.36□□□□□ -1.875e-8■■■■□ 23.8
YBX3P16989 MED15-213ENST00000438962 573 ntTSL 420.35■□□□□ 0.854e-21■■■■□ 23.7
YBX3P16989 TRAP1-216ENST00000576335 645 ntTSL 513.74□□□□□ -0.213e-9■■■■□ 23.7
YBX3P16989 ERAL1-204ENST00000471992 1508 ntTSL 510.62□□□□□ -0.711e-7■■■■□ 23.7
YBX3P16989 TPGS2-203ENST00000585635 1070 ntTSL 334.48■■■■□ 3.115e-8■■■■□ 23.7
YBX3P16989 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24.13■■□□□ 1.455e-8■■■■□ 23.7
YBX3P16989 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.095e-8■■■■□ 23.7
YBX3P16989 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.74■■□□□ 1.075e-8■■■■□ 23.7
YBX3P16989 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.35■■□□□ 1.015e-8■■■■□ 23.7
YBX3P16989 TPGS2-217ENST00000591823 803 ntTSL 220.33■□□□□ 0.855e-8■■■■□ 23.7
YBX3P16989 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.56■□□□□ 0.725e-8■■■■□ 23.7
YBX3P16989 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.555e-8■■■■□ 23.7
YBX3P16989 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.065e-8■■■■□ 23.7
YBX3P16989 TPGS2-210ENST00000590258 2679 ntTSL 211.73□□□□□ -0.535e-8■■■■□ 23.7
YBX3P16989 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC11.09□□□□□ -0.635e-8■■■■□ 23.7
YBX3P16989 TPGS2-218ENST00000591906 936 ntTSL 39.55□□□□□ -0.885e-8■■■■□ 23.7
YBX3P16989 TPGS2-206ENST00000587382 2079 ntTSL 37.66□□□□□ -1.185e-8■■■■□ 23.7
YBX3P16989 TPGS2-213ENST00000590652 515 ntTSL 56.85□□□□□ -1.315e-8■■■■□ 23.7
YBX3P16989 TPGS2-212ENST00000590500 488 ntTSL 33.96□□□□□ -1.785e-8■■■■□ 23.7
YBX3P16989 ERAL1-208ENST00000583487 695 ntTSL 313.83□□□□□ -0.21e-7■■■■□ 23.7
YBX3P16989 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.59■■□□□ 1.375e-7■■■■□ 23.7
YBX3P16989 WDR41-201ENST00000296679 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.515e-7■■■■□ 23.7
YBX3P16989 WDR41-227ENST00000515253 1507 ntTSL 27.42□□□□□ -1.225e-7■■■■□ 23.7
YBX3P16989 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.443e-7■■■■□ 23.7
YBX3P16989 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC17.83■□□□□ 0.443e-7■■■■□ 23.7
YBX3P16989 MRPL33-203ENST00000448427 527 ntTSL 413.89□□□□□ -0.193e-7■■■■□ 23.7
YBX3P16989 MRPL33-206ENST00000483992 729 ntTSL 210.66□□□□□ -0.73e-7■■■■□ 23.7
YBX3P16989 MRPL33-205ENST00000476552 587 ntTSL 29.04□□□□□ -0.963e-7■■■■□ 23.7
YBX3P16989 DALRD3-213ENST00000496568 839 ntTSL 231.42■■■□□ 2.624e-7■■■■□ 23.7
YBX3P16989 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.76■■□□□ 1.874e-7■■■■□ 23.7
YBX3P16989 DALRD3-207ENST00000460505 1886 ntTSL 1 (best)26.71■■□□□ 1.874e-7■■■■□ 23.7
YBX3P16989 DALRD3-203ENST00000420952 881 ntTSL 526.19■■□□□ 1.784e-7■■■■□ 23.7
YBX3P16989 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.334e-7■■■■□ 23.7
YBX3P16989 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.16■■□□□ 1.144e-7■■■■□ 23.7
YBX3P16989 DALRD3-211ENST00000484831 1727 ntTSL 521.63■■□□□ 1.054e-7■■■■□ 23.7
YBX3P16989 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.03■□□□□ 0.964e-7■■■■□ 23.7
YBX3P16989 DALRD3-215ENST00000498794 2987 ntTSL 217.67■□□□□ 0.424e-7■■■■□ 23.7
YBX3P16989 EIF3K-209ENST00000590134 711 ntTSL 212.77□□□□□ -0.376e-20■■■■□ 23.7
YBX3P16989 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC9.46□□□□□ -0.96e-7■■■■□ 23.7
YBX3P16989 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.08□□□□□ -1.286e-7■■■■□ 23.7
YBX3P16989 ANGPT1-203ENST00000518386 813 ntTSL 35.64□□□□□ -1.516e-7■■■■□ 23.7
YBX3P16989 MYD88-202ENST00000416282 2730 ntTSL 1 (best)14.93□□□□□ -0.022e-9■■■■□ 23.7
YBX3P16989 MYD88-204ENST00000421516 2687 ntAPPRIS ALT2 TSL 1 (best)14.72□□□□□ -0.052e-9■■■■□ 23.7
YBX3P16989 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.062e-9■■■■□ 23.7
YBX3P16989 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.12e-9■■■■□ 23.7
YBX3P16989 MYD88-210ENST00000484513 3314 ntTSL 210.74□□□□□ -0.692e-9■■■■□ 23.7
YBX3P16989 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.552e-9■■■■□ 23.7
YBX3P16989 ANKIB1-203ENST00000422095 2036 ntTSL 1 (best)7.94□□□□□ -1.142e-9■■■■□ 23.7
YBX3P16989 SEMA4C-205ENST00000474420 2625 ntTSL 219.13■□□□□ 0.658e-10■■■■□ 23.6
YBX3P16989 SEMA4C-204ENST00000467747 3371 ntTSL 214.71□□□□□ -0.058e-10■■■■□ 23.6
YBX3P16989 AKT1-205ENST00000553506 2830 ntTSL 221.08■□□□□ 0.972e-7■■■■□ 23.6
YBX3P16989 AKT1-218ENST00000557552 8396 ntTSL 516.84■□□□□ 0.292e-7■■■■□ 23.6
YBX3P16989 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC27.67■■■□□ 2.025e-8■■■■□ 23.6
YBX3P16989 RAC1-204ENST00000488373 845 ntTSL 1 (best)23.66■■□□□ 1.385e-8■■■■□ 23.6
YBX3P16989 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.885e-8■■■■□ 23.6
YBX3P16989 RAC1-205ENST00000495499 615 ntTSL 215.9■□□□□ 0.145e-8■■■■□ 23.6
YBX3P16989 RAC1-206ENST00000497741 651 ntTSL 213.62□□□□□ -0.235e-8■■■■□ 23.6
YBX3P16989 RAC1-203ENST00000473564 576 ntTSL 28.59□□□□□ -1.035e-8■■■■□ 23.6
YBX3P16989 RAB5C-207ENST00000550504 583 ntTSL 312.53□□□□□ -0.45e-8■■■■□ 23.6
YBX3P16989 DCAF12-205ENST00000466402 673 ntTSL 312.39□□□□□ -0.438e-17■■■■□ 23.6
YBX3P16989 USP10-207ENST00000563048 1315 ntTSL 216.43■□□□□ 0.227e-7■■■■□ 23.6
YBX3P16989 USP10-215ENST00000569038 730 ntTSL 316.23■□□□□ 0.197e-7■■■■□ 23.6
YBX3P16989 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.117e-7■■■■□ 23.6
YBX3P16989 USP10-219ENST00000570191 2717 ntTSL 2 BASIC13.31□□□□□ -0.287e-7■■■■□ 23.6
YBX3P16989 USP10-202ENST00000540269 3070 ntTSL 1 (best)13.04□□□□□ -0.327e-7■■■■□ 23.6
YBX3P16989 USP10-209ENST00000563433 540 ntTSL 27.06□□□□□ -1.287e-7■■■■□ 23.6
YBX3P16989 USP10-218ENST00000570053 502 ntTSL 37.06□□□□□ -1.287e-7■■■■□ 23.6
YBX3P16989 GPS1-206ENST00000578279 875 ntTSL 524.72■■□□□ 1.552e-12■■■■□ 23.6
YBX3P16989 GTF3C1-211ENST00000569653 897 ntTSL 218.93■□□□□ 0.622e-6■■■■□ 23.6
YBX3P16989 GTF3C1-201ENST00000356183 7018 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.632e-6■■■■□ 23.6
YBX3P16989 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.762e-6■■■■□ 23.6
YBX3P16989 NUDC-204ENST00000484772 607 ntTSL 216.25■□□□□ 0.191e-8■■■■□ 23.5
YBX3P16989 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.511e-12■■■■□ 23.5
YBX3P16989 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.351e-12■■■■□ 23.5
YBX3P16989 SMC4-203ENST00000462668 4235 ntTSL 24.03□□□□□ -1.761e-12■■■■□ 23.5
YBX3P16989 KMT5C-211ENST00000592631 869 ntTSL 323.89■■□□□ 1.411e-9■■■■□ 23.5
YBX3P16989 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.171e-9■■■■□ 23.5
YBX3P16989 KMT5C-207ENST00000474492 726 ntTSL 220.74■□□□□ 0.911e-9■■■■□ 23.5
YBX3P16989 KMT5C-204ENST00000460956 637 ntTSL 520.47■□□□□ 0.871e-9■■■■□ 23.5
YBX3P16989 KMT5C-203ENST00000445196 2077 ntTSL 519.84■□□□□ 0.771e-9■■■■□ 23.5
YBX3P16989 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.45■□□□□ 0.541e-9■■■■□ 23.5
YBX3P16989 KMT5C-209ENST00000587442 464 ntTSL 316.43■□□□□ 0.221e-9■■■■□ 23.5
YBX3P16989 APBA2-209ENST00000559709 594 ntTSL 432.02■■■□□ 2.722e-6■■■■□ 23.5
YBX3P16989 APBA2-210ENST00000559814 2555 ntTSL 1 (best)20.33■□□□□ 0.842e-6■■■■□ 23.5
YBX3P16989 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.382e-6■■■■□ 23.5
YBX3P16989 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.28■□□□□ 0.22e-6■■■■□ 23.5
YBX3P16989 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.192e-6■■■■□ 23.5
YBX3P16989 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.39■□□□□ 0.852e-7■■■■□ 23.5
YBX3P16989 RMND1-203ENST00000444024 743 ntTSL 320.32■□□□□ 0.842e-7■■■■□ 23.5
YBX3P16989 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.462e-7■■■■□ 23.5
YBX3P16989 RMND1-204ENST00000491268 838 ntTSL 1 (best)8.14□□□□□ -1.112e-7■■■■□ 23.5
YBX3P16989 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.453e-7■■■■□ 23.5
YBX3P16989 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.333e-7■■■■□ 23.5
YBX3P16989 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.73□□□□□ -0.053e-7■■■■□ 23.5
YBX3P16989 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.33e-7■■■■□ 23.5
YBX3P16989 SEPT9-206ENST00000431235 4004 ntTSL 5 BASIC13.19□□□□□ -0.33e-7■■■■□ 23.5
Retrieved 100 of 29,075 protein–RNA pairs in 315.2 ms